Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20989
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     31   0.77 
05_02_0097 - 6573093-6573254,6573297-6573398,6573922-6574005,657...    28   9.5  

>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -2

Query: 706  RKASRIVTLPRTLSTAGLDCFTARLKQDSTLRPAKSLLRF---E*T*HGMLQSAPNLTDN 536
            R  +R++ + RT+    +DCF  RL+ + +     S LRF   +     +L SA  L DN
Sbjct: 1004 RTEARLLIMTRTVVFVAVDCFKNRLEFNPSEEAEHSYLRFADVKRQCRSVLTSASELADN 1063

Query: 535  NHCLLKIK 512
             + + ++K
Sbjct: 1064 AYRVKRVK 1071


>05_02_0097 -
           6573093-6573254,6573297-6573398,6573922-6574005,
           6574190-6574285,6574373-6574423,6574537-6574677,
           6575025-6575081,6575163-6575237,6575323-6575595,
           6575689-6575748,6576184-6576285,6576377-6576451
          Length = 425

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = +1

Query: 349 SLFVTVIDVLAPSSFVY*STSTIWLSNGRSFFLFYV**YDFKSSINVSKYRCKLSLSLVG 528
           SL  T +D  A   F         L NGR F   +    +FK  I VS  +C LSL L+G
Sbjct: 333 SLRCTALDACAHPFFDELREPNARLPNGRPFPPLF----NFKHEILVSMRKCVLSLVLIG 388

Query: 529 S 531
           +
Sbjct: 389 A 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,811,093
Number of Sequences: 37544
Number of extensions: 362649
Number of successful extensions: 651
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)