Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20989
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.45 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.5  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   7.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   7.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 374  YWHLRRSYIKARPRFGLATVDLFFCSTYNNMIL 472
            +WH R + IK RP      V LFF     N+ L
Sbjct: 983  FWHHRLAEIKRRPDLEYGKVWLFFGCRQRNLDL 1015


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 597 KDLAGRNVESCFSLAVKQSK-PAVLNVLGSVT 689
           + L  +N E CFSL  K  K P  L  +  VT
Sbjct: 535 RTLGNQNSEMCFSLKFKNKKLPVFLAEIWDVT 566


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 150 GMLRNQKYSGSHDYTFPGGSTGTYISK 70
           G +R    S  HD    GGS G   SK
Sbjct: 249 GTIRKCDESSPHDQVIIGGSNGLDTSK 275


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 646 NNPSLLCLMFLAV*RFDLLFAEIN 717
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 646 NNPSLLCLMFLAV*RFDLLFAEIN 717
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 19/83 (22%), Positives = 31/83 (37%)
 Frame = -1

Query: 752 FLISYELTVLYGLISAKSKSNRYTAKNIKHSRLGLFHRETETRLHITPSQIFASI*VNIT 573
           F   +  TV+Y  +  K+          KHS          ++L I    +F  I +N  
Sbjct: 726 FAAGFCFTVVYAALLTKTNRISRIFNASKHSAKRPSFISPRSQLIICSGLVFVQILINGV 785

Query: 572 WDAAVRSQSHRQQSLPTKDKDNL 504
           W   +   +      PT++ DNL
Sbjct: 786 W--MIIDPAKAMHHYPTRE-DNL 805


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 96  GSTGTYISKHSNR 58
           GST TY SKH+ +
Sbjct: 381 GSTETYYSKHNTQ 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,338
Number of Sequences: 438
Number of extensions: 4619
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)