Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20989
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20040.1 68415.m02342 protein kinase, putative similar to pro...    29   3.4  
At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containi...    28   7.9  

>At2g20040.1 68415.m02342 protein kinase, putative similar to
           protein kinase [Homo sapiens] gi|1052737|emb|CAA59733
          Length = 261

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 730 QCSMD*FQRKASRIVTLPRTLSTAGLDCFTARLKQDSTLR 611
           +  +D FQ+ A   +T PR LS+   D  T  L+ D  LR
Sbjct: 150 ESELDTFQKIAKGQLTFPRVLSSEAEDLITKLLEVDENLR 189


>At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 710

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 743 SYELTVLYGLISAKSKSNRYTAKNIK-----HSRLGLFHRETETRLHITPSQIF 597
           S +L V YGLI    KS  Y  KN++     HS + L  + ++  + I  S  F
Sbjct: 643 SEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRF 696


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,878,873
Number of Sequences: 28952
Number of extensions: 317621
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)