Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20988
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.4  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   5.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   5.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.4  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 580  PADTIAAPSVEETPNKASFETIESGLKSLETNFN 681
            P+DT    + ++T   A+ ETI  GLK   TN++
Sbjct: 1142 PSDTWFDENTKDTKITAASETILHGLKKY-TNYS 1174


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 44  HAQLHPGQGP 73
           HA +HPGQ P
Sbjct: 99  HAVVHPGQSP 108


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 296 PLVDLRNPGPPQHQEHETQNPEHHED 373
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 296 PLVDLRNPGPPQHQEHETQNPEHHED 373
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 296 PLVDLRNPGPPQHQEHETQNPEHHED 373
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 332 HQEHETQNPEHHE 370
           HQ+H  QN  H E
Sbjct: 314 HQQHHQQNMSHEE 326


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 186 KEVIDIPVKVIVEEIKP 236
           KEV D+P   + E  KP
Sbjct: 25  KEVFDVPNNFLPERYKP 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,711
Number of Sequences: 336
Number of extensions: 3126
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)