Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20988
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 30 0.36
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 29 0.48
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 1.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 1.9
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 27 1.9
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 27 2.5
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 3.4
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 4.4
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 4.4
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 5.9
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.9
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 7.8
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 29.9 bits (64), Expect = 0.36
Identities = 22/105 (20%), Positives = 53/105 (50%)
Frame = +3
Query: 66 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 245
K P +E P V L+ + I +I +++ + ++ +V++ P + ++ +I+ +
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435
Query: 246 SDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 380
+ + +KM K+ L P PR++ +T+H+I + ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 29.5 bits (63), Expect = 0.48
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 467 KWYARTEQINELQAACNISKKISALRYKS*MKRYILLNQLTPSRPLLSRKRQIKLLLKQS 646
+W + TEQ+ ELQ +C S + + S + +L S ++ +Q++ LL+++
Sbjct: 586 RWKSLTEQVVELQPSCKSSSQRHLIIRNSWARNLLLRLTGCSSEAIVENFKQLRCLLQEN 645
Query: 647 N 649
+
Sbjct: 646 S 646
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 27.5 bits (58), Expect = 1.9
Identities = 26/107 (24%), Positives = 44/107 (41%)
Frame = +3
Query: 66 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 245
++ E E V+D E+EL +K +N ++ E+ P + + K
Sbjct: 646 EIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQA 704
Query: 246 SDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKS 386
S K + + K + E+P R+ K TK+ L+ K KKS
Sbjct: 705 SKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKKSTKKS 749
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 552 LLYLSAEIFLEMLQAAWSSLICSVRAY---HFPIPSDTS 445
L L AEI LE LQ +W L C A HF I D+S
Sbjct: 3894 LFSLDAEISLEKLQNSWKRL-CQKNAILRTHFAISEDSS 3931
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 323 PPQHQEHETQNPEHHEDAEKIVSSVKNDIYTAGIALRQGFQEVSDGIGKWYARTEQ 490
PP H ++ TQ HEDA+ S + ++ I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Frame = +2
Query: 293 RPLVDLRNPGPPQHQEHE--TQNPEHHEDAEKIVSSVKNDIYTAG-----IALRQGFQEV 451
RPL++LR P P E + +N ++ + I+ S N+ +TA ++ GF++
Sbjct: 597 RPLINLRQPKPLLRSEADCIIKNLQNFSTDDLIIKS--NEKFTAAKNSLINVIKSGFEQ- 653
Query: 452 SDGIGKWYARTEQINELQAAC 514
++ I ++ +T + L C
Sbjct: 654 NEFINPYFLQTNYLKNLLCCC 674
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 284 EIKRPLVDLRNPGPPQHQEHETQNPEHHEDAE 379
E +P D RN GP Q + + + PE H +++
Sbjct: 148 EEPKPSGDFRNEGPKQCDDSKIEKPELHVNSK 179
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 251 FKNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSS 394
+KN +V E E K D ++ P ++ + N HH A+ S
Sbjct: 90 YKNDDVAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKS 137
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +3
Query: 24 NYIRARRTRSSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDI 203
NYI+ R + D++ + + + +D + E+E A TIKD SL +N ++
Sbjct: 42 NYIQKR-----VQDELKQLQLRQKKAIDAIQ-EEEWKSNAKTIKDSQGSLDSN---LLSA 92
Query: 204 PVKVIVEEIKPSLKSDLKTLKCRMK 278
+ E+++ + K LK ++K
Sbjct: 93 EFRSFQEKLEKQSSINDKELKIKLK 117
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +3
Query: 96 NVVDNLSSEQE--------LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEI 230
NVVD+LS EQE L DQ N + NSLR+ +P + V++I
Sbjct: 137 NVVDDLSKEQESRKESAPQLYDQINAFIEKVNSLRSG-----SVPFTITVDDI 184
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +3
Query: 60 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD----IDN----SLRANKKEVIDIPVKV 215
PD A + L++ DN+SS NTI + ID+ +L N +++ + + +
Sbjct: 434 PDSYLAAPKERLSISDNMSSSSSQTATVNTISNYLNVIDSVREIALTVNDEKIYGLAISL 493
Query: 216 IVEEIKPSLKSDLKT 260
++++ S + T
Sbjct: 494 LIQKFSRKFDSRVST 508
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 114 SSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD 251
S+ +EL+D+ KD+ +A K EV+D+ VK E+++ KS+
Sbjct: 465 STYKELMDRVQN-KDLLCQEQARKLEVLDLNVKSSREQLQYVSKSN 509
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,833
Number of Sequences: 5004
Number of extensions: 51220
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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