Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20988
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z81124-10|CAH60752.1|  241|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81050-1|CAB02850.1|  582|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      27   9.5  

>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 320 GPPQHQEHETQNPEHHEDAEKIVSSVKNDIY 412
           GPP HQ+H  Q  +H+  A    SS  N +Y
Sbjct: 133 GPPVHQQHYQQQQQHYGAATSAPSSSYNVMY 163


>U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical
           protein ZC196.4 protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 335 QEHETQNPEHHEDAEKIVSSVKN--DIYTAGIALRQGFQEVSDGIGKW 472
           ++ E +  E  ED EK+  + K   + + +G+ LRQ F E    +G W
Sbjct: 234 RKREKRRRELQEDLEKMRQNQKQCFEAWLSGMRLRQHFNEKEQEVGNW 281


>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -2

Query: 265 FNVFKSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGL 86
           F   K LF +  +   + L+  ++T+ +    LL  S   L  +     + + STT  GL
Sbjct: 257 FQKMKELFTERHLRMALILSVSALTNTVGLWALLLSSTFFLENANVESEIAEWSTTAMGL 316

Query: 85  SSASGTLSG 59
           +  SGT++G
Sbjct: 317 AYVSGTITG 325


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -2

Query: 265 FNVFKSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGL 86
           F   K LF +  +   + L+  ++T+ +    LL  S   L  +     + + STT  GL
Sbjct: 257 FQKMKELFTERHLRMALILSVSALTNTVGLWALLLSSTFFLENANVESEIAEWSTTAMGL 316

Query: 85  SSASGTLSG 59
           +  SGT++G
Sbjct: 317 AYVSGTITG 325


>Z81124-10|CAH60752.1|  241|Caenorhabditis elegans Hypothetical
           protein T21B4.15 protein.
          Length = 241

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 278 NEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIYTAG 421
           NE +  P+VD   PG P      T+  + +++ EK+ + + +D+Y+ G
Sbjct: 60  NELLGVPVVDNLPPGSPMGFVKGTE--DEYDELEKLTAQICSDVYSQG 105


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 286 FLIFIRHFNVFKSLFNDGLISSTITLT--GMSMTSFLFARRLLSMSLMVLAWSMSSCSL 116
           FL ++  F   K++    L+   ITLT  G  +T FL  +R++     +L  S   CSL
Sbjct: 25  FLCYLAIFQSPKAIRTYSLVLINITLTNVGACVTGFLLDQRIIQSGKSMLYVSYGYCSL 83


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
 Frame = +3

Query: 117 SEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMKMRKSRG 296
           SE +L+D   T    D+  R +KK   D   K+  E+++   K   K +    KM KS  
Sbjct: 92  SEDDLLDVKKTASKEDDKKRMDKK---DPSKKLSKEKLREEKKEQSKKVNKEKKMNKSES 148

Query: 297 L*SI*EIP-----GPRSI---KSTKHRILNTTKMLK---KSFLPSKMTFT 413
           +    E P      PR I   K+ K +    +K+ +   K ++P   T+T
Sbjct: 149 VDEDNEQPPEPGSDPRKIWAFKAAKMKCQAISKLHQDKIKGYMPPNCTYT 198


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 275 ENEEIKRPLVDLRNPGPPQHQEHETQNPE 361
           EN+  +   V+ + P P QHQ+ + Q PE
Sbjct: 404 ENQRYEGNFVEYQPPPPQQHQQQQPQAPE 432



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 48  RSSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIK-DIDNSLRANKKEVID 200
           + S P KVP A  K   +     S+QEL  ++  +  D+ ++L +NKKE+ID
Sbjct: 489 KPSQPAKVPAAPIKAPRL-----SDQELESESQKLALDVISNLFSNKKEIID 535


>U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical
           protein EEED8.3 protein.
          Length = 194

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/116 (18%), Positives = 54/116 (46%)
 Frame = +3

Query: 63  DKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSL 242
           + V E + + +   DN  + Q +  + NT+K++  ++ +N+K+  + P++++   I    
Sbjct: 17  EMVEEEKFEKIENTDNSENFQYVSTKGNTVKEV--NINSNEKKKKEAPIQILTAMIGKWK 74

Query: 243 KSDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKSFLPSKMTF 410
            +  + L+    + K   +  +    G    K   +++   T +L KS +P+   F
Sbjct: 75  LASSENLQEYFTLEKFPEITQMAWEHGITCYKMNGNQLHVHTDLLGKSLIPTIFEF 130


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
 Frame = +3

Query: 66  KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRAN---KKEVIDIPVKVIVEEIK- 233
           K+ E ED+ +  V N    +++ ++    K++ N  ++N   KK     P+   VEE K 
Sbjct: 338 KLVEEEDEEVETVKNQKKMKQIFEKELKSKEVKNPKKSNKSTKKPTKSAPIVKKVEEKKV 397

Query: 234 -----PSLKSDLKTLKCRMKMRK 287
                   +SD KTL  ++ + K
Sbjct: 398 EENEVSDDESDQKTLVMKVDLSK 420


>Z81050-1|CAB02850.1|  582|Caenorhabditis elegans Hypothetical
           protein C50B6.2 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +3

Query: 48  RSSIPDKVPEA----EDKPLNVVDN-LSSEQELIDQANTIKDIDNSLRANKKE 191
           R+ I  KV EA     ++P  V D  + +EQ+  ++ +  KD++NS   N++E
Sbjct: 233 RAEIKQKVEEALGVASEEPETVADEAVKTEQKEAEEDSVEKDVENSDEQNQEE 285


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
 Frame = +3

Query: 66  KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRAN---KKEVIDIPVKVIVEEIK- 233
           K+ E ED+ +  V N    +++ ++    K++ N  ++N   KK     P+   VEE K 
Sbjct: 338 KLVEEEDEEVETVKNQKKMKQIFEKELKSKEVKNPKKSNKSTKKPTKSAPIVKKVEEKKV 397

Query: 234 -----PSLKSDLKTLKCRMKMRK 287
                   +SD KTL  ++ + K
Sbjct: 398 EENEVSDDESDQKTLVMKVDLSK 420


>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 57  IPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKP 236
           +P+  PE   +PL VV    +   L  Q   I   + ++   +  V++  V+V+     P
Sbjct: 126 VPESTPEPISEPLPVVQEEPASDSLTVQDEQIAQAEPAVEPEEPVVVE-HVEVVTASEDP 184

Query: 237 SLKS 248
           +L+S
Sbjct: 185 TLES 188


>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 317 PGPPQHQEHETQNPEHH 367
           P PPQ Q  + Q+P HH
Sbjct: 469 PPPPQQQHQQQQHPPHH 485


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 317 PGPPQHQEHETQNPEHH 367
           P PPQ Q  + Q+P HH
Sbjct: 794 PPPPQQQHQQQQHPPHH 810


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 317 PGPPQHQEHETQNPEHH 367
           P PPQ Q  + Q+P HH
Sbjct: 794 PPPPQQQHQQQQHPPHH 810


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,309
Number of Sequences: 27780
Number of extensions: 291990
Number of successful extensions: 1373
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)