Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20988
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 36 0.033
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 34 0.077
At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi... 33 0.23
At3g61390.2 68416.m06872 U-box domain-containing protein several... 32 0.41
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 31 0.72
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 30 1.7
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 29 3.8
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 29 3.8
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 29 3.8
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 28 6.7
At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial, p... 28 6.7
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 28 6.7
At5g54050.1 68418.m06722 DC1 domain-containing protein 27 8.8
At3g02125.1 68416.m00179 hypothetical protein 27 8.8
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 27 8.8
At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 27 8.8
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 347 TQNPEHHEDAEKIVSSVKNDIYTAGIALRQGFQEVSDGIGKWYART 484
T P HH D + VS +K+++ T G + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 34.3 bits (75), Expect = 0.077
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 308 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIYTAGIALRQGFQEVSDGI 463
L P + Q P+H E+ E +++ +KND G R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 534
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -2
Query: 277 FIRHFNVFKSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLD--KLS 104
F+R +++ + G+I ST+T M + F RL MV + CS D S
Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430
Query: 103 TTFKGLSSASGTLSGMEL 50
T KG A G+EL
Sbjct: 431 TLIKGYCKAGRVDDGLEL 448
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 31.9 bits (69), Expect = 0.41
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Frame = +2
Query: 266 VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDIYTAGIALRQGF 442
+ +E EE+K L ++ G + +E T N H E + + + +DI GF
Sbjct: 319 IREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAADGF 376
Query: 443 QEVSDGIGKWYARTEQINE-LQAACNISKKISALRYKS*MKRYILLNQLTPSRPLLSRK 616
+ I +W+ R + + + + + L +S ++ ++ L +L +RP R+
Sbjct: 377 TYEGEAISRWFERGHETSPMINKRLPHTSLVPNLALRSAIQEWLQLRELL-NRPSACRE 434
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 504 WSSLICSVRAYHFPIPSDTSW 442
WS+ S R YHF IP DT W
Sbjct: 100 WSNHFVSKRKYHFIIPIDTEW 120
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/96 (22%), Positives = 48/96 (50%)
Frame = +3
Query: 60 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 239
P + P+ DK + D + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 240 LKSDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 347
LK + + + ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 263 EVPDENEEIKRPLVDLRNPGPPQHQEHE 346
+VPDE EEIK P + G H HE
Sbjct: 264 DVPDEEEEIKDPFKVINENGDIVHISHE 291
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 84 DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTL 263
DK + D + +EL + N +K +L +E+ K + E K SLKSD++ L
Sbjct: 40 DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97
Query: 264 KCRMKMR 284
+ + R
Sbjct: 98 NLQYQQR 104
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 99 VVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMK 278
V + +++ +E + QA+T +D LRA V+D K+I E+ + + R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592
Query: 279 MRKS 290
++KS
Sbjct: 593 LKKS 596
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 260 VEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 406
V++ ++ EE + VDL +P P + +E E +N ++ ED +K K D
Sbjct: 74 VKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPD 121
>At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial,
putative / HSP70, mitochondrial, putative strong
similarity to SP|Q01899 Heat shock 70 kDa protein,
mitochondrial precursor {Phaseolus vulgaris}
Length = 682
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 254 KNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIYTAGIALR 433
K E+ + ++ K+ L+DLRN E E+ EKI + + ++I TA LR
Sbjct: 561 KEAELNAQKDQEKKQLIDLRNSADTTIYSVEKSLSEYR---EKIPAEIASEIETAVSDLR 617
Query: 434 QGF--QEVSDGIGKWYARTEQINEL 502
++V D K A + ++++
Sbjct: 618 TAMAGEDVEDIKAKVEAANKAVSKI 642
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 266 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIYT 415
+PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T
Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPT 110
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 263 EVPDENEEIKRPLVDLRNPGPPQHQEHE 346
+VP+E EEIK P + G H HE
Sbjct: 276 DVPEEEEEIKDPFKVINEKGDIVHFSHE 303
>At3g02125.1 68416.m00179 hypothetical protein
Length = 355
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 538 AQIQKLNETLHFIKPADTIAAPSVEETPNKASFETI 645
A+I + ET+H I +++ P + PN+ ETI
Sbjct: 134 AEIPRFEETVHVITEINSVPLPPPVKKPNEYEKETI 169
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 479 ERTIFQYRLTLPGSLDEERFPLCKCHF*RKKRFFQHL--RGVQDSVFRALDAAGARD 315
+R ++ Y+L S +EE + C K +F+ G +D FRA+DA + D
Sbjct: 740 KRKVYAYKLVAADSPEEENYETCTRKEMMSKMWFEWNVGSGREDFGFRAIDADHSGD 796
>At1g11670.1 68414.m01340 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; EST gb|W43487
comes from this gene
Length = 503
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 205 GMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSG 59
GMSM + +FA RL SM L + S ++ L G+ SA TL G
Sbjct: 70 GMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLML-GMGSAVETLCG 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,195
Number of Sequences: 28952
Number of extensions: 267360
Number of successful extensions: 1093
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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