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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20988
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi...    36   0.033
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    34   0.077
At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi...    33   0.23 
At3g61390.2 68416.m06872 U-box domain-containing protein several...    32   0.41 
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai...    31   0.72 
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr...    30   1.7  
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ...    29   3.8  
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    29   3.8  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    29   3.8  
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin...    28   6.7  
At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial, p...    28   6.7  
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide...    28   6.7  
At5g54050.1 68418.m06722 DC1 domain-containing protein                 27   8.8  
At3g02125.1 68416.m00179 hypothetical protein                          27   8.8  
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica...    27   8.8  
At1g11670.1 68414.m01340 MATE efflux family protein similar to r...    27   8.8  

>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 452

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +2

Query: 347 TQNPEHHEDAEKIVSSVKNDIYTAGIALRQGFQEVSDGIGKWYART 484
           T  P HH D  + VS +K+++ T G + ++ FQ V D  G+W  RT
Sbjct: 20  TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 308 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIYTAGIALRQGFQEVSDGI 463
           L  P      +   Q P+H E+ E +++ +KND    G   R G  ++S  +
Sbjct: 64  LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115


>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 534

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -2

Query: 277 FIRHFNVFKSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLD--KLS 104
           F+R  +++  +   G+I ST+T   M +  F    RL     MV +     CS D    S
Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430

Query: 103 TTFKGLSSASGTLSGMEL 50
           T  KG   A     G+EL
Sbjct: 431 TLIKGYCKAGRVDDGLEL 448


>At3g61390.2 68416.m06872 U-box domain-containing protein several
           hypothetical proteins - Arabidopsis thaliana
          Length = 435

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
 Frame = +2

Query: 266 VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDIYTAGIALRQGF 442
           + +E EE+K  L ++    G  + +E  T N  H E  +  +  + +DI         GF
Sbjct: 319 IREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAADGF 376

Query: 443 QEVSDGIGKWYARTEQINE-LQAACNISKKISALRYKS*MKRYILLNQLTPSRPLLSRK 616
               + I +W+ R  + +  +      +  +  L  +S ++ ++ L +L  +RP   R+
Sbjct: 377 TYEGEAISRWFERGHETSPMINKRLPHTSLVPNLALRSAIQEWLQLRELL-NRPSACRE 434


>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
           Pfam profile: PF00628: PHD-finger
          Length = 704

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 504 WSSLICSVRAYHFPIPSDTSW 442
           WS+   S R YHF IP DT W
Sbjct: 100 WSNHFVSKRKYHFIIPIDTEW 120


>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor GI:3757520
           from [Arabidopsis thaliana]
          Length = 226

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/96 (22%), Positives = 48/96 (50%)
 Frame = +3

Query: 60  PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 239
           P + P+  DK   + D +    +  D+A  +KD+++SL+   KE+ D   K  + + K  
Sbjct: 95  PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151

Query: 240 LKSDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 347
           LK + + +  ++K  K++       +P P+++   +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187


>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 488

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 263 EVPDENEEIKRPLVDLRNPGPPQHQEHE 346
           +VPDE EEIK P   +   G   H  HE
Sbjct: 264 DVPDEEEEIKDPFKVINENGDIVHISHE 291


>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 84  DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTL 263
           DK   + D +   +EL  + N +K    +L    +E+     K  + E K SLKSD++ L
Sbjct: 40  DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97

Query: 264 KCRMKMR 284
             + + R
Sbjct: 98  NLQYQQR 104


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +3

Query: 99  VVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMK 278
           V + +++ +E + QA+T +D    LRA    V+D   K+I E+       + +    R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592

Query: 279 MRKS 290
           ++KS
Sbjct: 593 LKKS 596


>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 283

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 260 VEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 406
           V++ ++ EE  +  VDL +P P + +E E +N ++ ED +K     K D
Sbjct: 74  VKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPD 121


>At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial,
           putative / HSP70, mitochondrial, putative strong
           similarity to SP|Q01899 Heat shock 70 kDa protein,
           mitochondrial precursor {Phaseolus vulgaris}
          Length = 682

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +2

Query: 254 KNVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIYTAGIALR 433
           K  E+  + ++ K+ L+DLRN         E    E+    EKI + + ++I TA   LR
Sbjct: 561 KEAELNAQKDQEKKQLIDLRNSADTTIYSVEKSLSEYR---EKIPAEIASEIETAVSDLR 617

Query: 434 QGF--QEVSDGIGKWYARTEQINEL 502
                ++V D   K  A  + ++++
Sbjct: 618 TAMAGEDVEDIKAKVEAANKAVSKI 642


>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
           identical to cDNA tubulin folding cofactor A,
           GI:20514256, SP|O04350 Tubulin-specific chaperone A
           (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
           cofactor A homolog) {Arabidopsis thaliana}
          Length = 113

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 266 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIYT 415
           +PD ++ ++  L DL++      +  E + PE  EDA+K V+ V+    T
Sbjct: 62  IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPT 110


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 263 EVPDENEEIKRPLVDLRNPGPPQHQEHE 346
           +VP+E EEIK P   +   G   H  HE
Sbjct: 276 DVPEEEEEIKDPFKVINEKGDIVHFSHE 303


>At3g02125.1 68416.m00179 hypothetical protein
          Length = 355

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 538 AQIQKLNETLHFIKPADTIAAPSVEETPNKASFETI 645
           A+I +  ET+H I   +++  P   + PN+   ETI
Sbjct: 134 AEIPRFEETVHVITEINSVPLPPPVKKPNEYEKETI 169


>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|Q61687
           Transcriptional regulator ATRX {Mus musculus}; contains
           PFam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain
          Length = 816

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 479 ERTIFQYRLTLPGSLDEERFPLCKCHF*RKKRFFQHL--RGVQDSVFRALDAAGARD 315
           +R ++ Y+L    S +EE +  C       K +F+     G +D  FRA+DA  + D
Sbjct: 740 KRKVYAYKLVAADSPEEENYETCTRKEMMSKMWFEWNVGSGREDFGFRAIDADHSGD 796


>At1g11670.1 68414.m01340 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family; EST gb|W43487
           comes from this gene
          Length = 503

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -2

Query: 205 GMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSG 59
           GMSM + +FA RL SM L   +   S  ++  L     G+ SA  TL G
Sbjct: 70  GMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLML-GMGSAVETLCG 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,195
Number of Sequences: 28952
Number of extensions: 267360
Number of successful extensions: 1093
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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