Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20986
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 109 3e-25
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 109 3e-25
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 1.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 4.4
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 25 7.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.7
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 109 bits (263), Expect = 3e-25
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 410
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112
Score = 77.4 bits (182), Expect = 2e-15
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
Score = 77.0 bits (181), Expect = 2e-15
Identities = 34/57 (59%), Positives = 45/57 (78%)
Frame = +1
Query: 508 KIPELPLVVADKVQEINKTKQAVIFLKRLKAWSDILKVYKSKRLRAGKGKMRNRRRI 678
+IPE+PLVV D VQ KTK+AV LK +KA+ D++KV S++LRAGKGK+RNRR +
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHV 202
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 443 LGGSVAATGVPALVQARGHIIERFPSFP 526
+ +VAA+GVP+L+ ARGH IE P P
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVP 151
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 109 bits (263), Expect = 3e-25
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 410
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/57 (59%), Positives = 45/57 (78%)
Frame = +1
Query: 508 KIPELPLVVADKVQEINKTKQAVIFLKRLKAWSDILKVYKSKRLRAGKGKMRNRRRI 678
+IPE+PLVV D VQ KTK+AV LK +KA+ D++KV S++LRAGKGK+RNRR +
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHV 202
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 443 LGGSVAATGVPALVQARGHIIERFPSFP 526
+ +VAA+GVP+L+ ARGH IE P P
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVP 151
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 211 KNSRQPYCVSKEAGHKPVLNHGVLDVLSP 297
++ +PY ++ + + P+ N G LD++SP
Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +2
Query: 374 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH 499
+ PH L + AP QP E +V P+ +GH
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGH 895
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 134 APCTVSLFSEYTDTKGRATDRLISLL 57
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 72 SIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGP 182
SI SP+ SVG + + D + S + P+ + G P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 561 LVDLLDFVGYNQGKLG-NLSIMCPLA*TSAGTPVAATLPPRPLS 433
L+D L +G +Q ++ N + SAGTP + + PP P S
Sbjct: 192 LIDSLMKMGISQDQIAENADFVKAYLNESAGTPTSTSAPPIPPS 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,730
Number of Sequences: 5004
Number of extensions: 49566
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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