Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20986
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   108   4e-24
U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  108 bits (259), Expect = 4e-24
 Identities = 47/52 (90%), Positives = 48/52 (92%)
 Frame = +3

Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 410
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 34/55 (61%), Positives = 45/55 (81%)
 Frame = +1

Query: 508 KIPELPLVVADKVQEINKTKQAVIFLKRLKAWSDILKVYKSKRLRAGKGKMRNRR 672
           ++ E+PLVV+DKV+   KTK+AV+FL+R   W+DI KVY SKR RAGKGK+RNR+
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQ 199



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +2

Query: 443 LGGSVAATGVPALVQARGHIIERFPSFP 526
           +  ++AA+G+PAL+QARGH+I++    P
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVP 150


>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 300 FGRQHVQYPMIQHWFVTSLLAHAV--GLPRVLGHRNVNIID-QVRTD 169
           F  + V+ P+   WFVTSL+  AV   +   + H  V ++D ++R+D
Sbjct: 386 FSPETVEDPVTNGWFVTSLIREAVEENIKEAICHILVQLLDSKIRSD 432


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 369 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 286
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 538 RLQPGEARESFNNVSSSLNER 476
           R QP  +R S NN+SSSL+ R
Sbjct: 24  RRQPHHSRSSSNNISSSLHSR 44


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 669 TVAHFTLTSTKTLRLVHLKDIRPCLEALQEDDSLFGLVDLLDFVGYN 529
           +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 269 SVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,097
Number of Sequences: 27780
Number of extensions: 303863
Number of successful extensions: 1027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)