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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20985
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...   125   7e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    69   7e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    59   5e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    48   1e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    47   3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    44   2e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    44   3e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    43   4e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    43   5e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    41   2e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    39   6e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    38   0.001
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    37   0.002
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    36   0.006
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    35   0.010
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    33   0.053
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    32   0.092
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    29   0.49 
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    29   0.49 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    28   1.1  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    28   1.1  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    27   2.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   4.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   4.6  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   6.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   6.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   6.0  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   8.0  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   8.0  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  125 bits (301), Expect = 7e-30
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
 Frame = +1

Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVK 435
           L PF K+FY  H  V  RS  EV EYR + E+ V G+ V  P   FEEA FP+YV + VK
Sbjct: 79  LIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK 138

Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIA 612
            +G++ PTPIQ Q WP+AMSG+++V     G  + +   L +         +  GDGPI 
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIV 198

Query: 613 LVLAPTRELAQQIQQVAADF 672
           LVLAPTRELA QIQQ    F
Sbjct: 199 LVLAPTRELAVQIQQECTKF 218


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
 Frame = +1

Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPTQYFEEANFPDYVQQGVK 435
           + F K+FY     +   SP EV+E R   + + + G++   P   + +          + 
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434

Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIA 612
           ++GY++PT IQAQ  P   SG++++     G  + +   L      K    ++ G+GPIA
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIA 494

Query: 613 LVLAPTRELAQQI 651
           +++ PTRELA QI
Sbjct: 495 IIMTPTRELAVQI 507


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
 Frame = +1

Query: 334 RNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
           +  + +++ G ++ NP + +EEA  P  + + +K + YKEP+ IQ    P+ +  K+L+ 
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291

Query: 514 -*PNGFRQNVGLHLASHCA-HK*P--TAIRRGDGPIALVLAPTRELAQQIQ 654
               G  +     +    A  K P  T      GP A+VLAPTRELAQQIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 515 SQTGSGKTLAYILPAIVHINNQPLFGEVMVRL 610
           ++TGSGKT A+I+P I+ I+  P   E  + L
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHL 324


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
 Frame = +1

Query: 349 VTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNG 525
           V VSG ++  P   F       ++ Q +K  GY +PTP+Q    PI  SG++L+A    G
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216

Query: 526 FRQNVG--LHLASHCAHK*PTAI----RRGDG-------PIALVLAPTRELAQQIQQVAA 666
             +  G    + S    K P A+      G G       P  L+LAPTREL  QI + + 
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276

Query: 667 DF 672
            F
Sbjct: 277 KF 278


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
 Frame = +1

Query: 361 GVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNV 540
           G+   +  + F + N    +Q+ +    +++PT +Q++  P+A+ GK+LVA         
Sbjct: 6   GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65

Query: 541 GLHLAS--HCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHILCS*HV 702
             +L        K         G  AL+L PTRELAQQ+  V         CS H+
Sbjct: 66  AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTA--FCSKHI 119


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = +1

Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*P-NGFRQNVGLHLASHCA 567
           F+  N   +++  V   G+K+ TP+QA   P+ +  K+LV     G  + +   L   C 
Sbjct: 3   FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP--CF 60

Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
            K         G  AL++APTRELA QI  V  +
Sbjct: 61  DKVTRRDTDETGLGALIVAPTRELATQIFNVTKE 94


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
 Frame = +1

Query: 325 EEYRNKHEVTVSGVEVHN---PTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 495
           + Y  KH ++ +  +      P   F+E +    +++G+K   YKEPTPIQA  WP  ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201

Query: 496 GKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQ 648
           G+++V     G  + V   + +               P  LV++PTRELA Q
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPA--LQYLNGLSDNKSVPRVLVVSPTRELAIQ 251



 Score = 28.7 bits (61), Expect = 0.86
 Identities = 10/20 (50%), Positives = 18/20 (90%)
 Frame = +2

Query: 515 SQTGSGKTLAYILPAIVHIN 574
           ++TGSGKT+A+ +PA+ ++N
Sbjct: 209 AETGSGKTVAFGIPALQYLN 228


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 34/127 (26%), Positives = 55/127 (43%)
 Frame = +1

Query: 325 EEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
           +E     E+T S  E  N    FEE N  + + +G+   GY+ P+ +Q++       G++
Sbjct: 3   DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60

Query: 505 LVA*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684
           ++A             +         ++R      AL+L+PTRELA QIQ V      H+
Sbjct: 61  VIAQAQSGTGKTAT-FSIGILQSIDLSVRDTQ---ALILSPTRELAVQIQNVVLALGDHM 116

Query: 685 LCS*HVC 705
               H C
Sbjct: 117 NVQCHAC 123


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +1

Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCA 567
           FE+      +  G+   G++ P+PIQ +  PIA+SG++++A   NG  +     + S   
Sbjct: 46  FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPS--L 103

Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684
            K  T   +      L+L PTRELA Q  QV      H+
Sbjct: 104 EKVDTKKSKIQ---TLILVPTRELALQTSQVCKTLGKHM 139


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 26/89 (29%), Positives = 43/89 (48%)
 Frame = +1

Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
           F+E    D + +  + +G+K PTPIQ +  P+ ++ ++++    G  Q      A+    
Sbjct: 48  FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI----GLAQTGSGKTAAFALP 103

Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQ 657
                        A+VLAPTRELA QI +
Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQISE 132


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
 Frame = +1

Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKNLVA*PNGFRQNVGLHLASHCA 567
           F++ N    + +G+   G++ P+ IQ +   PI      L    +G  +     ++    
Sbjct: 21  FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSIS--VL 78

Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHILCS*HVC 705
            K  T++++     AL+LAPTRELAQQIQ+V       +    H C
Sbjct: 79  QKIDTSLKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHAC 121


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 25/94 (26%), Positives = 40/94 (42%)
 Frame = +1

Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
           F+       + + +   G+K PTPIQ +  P+ + G+++V             +     H
Sbjct: 71  FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130

Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAADF 672
              T         AL+L+P RELA Q  +V  DF
Sbjct: 131 LKSTL--ANSNTRALILSPNRELALQTVKVVKDF 162



 Score = 29.5 bits (63), Expect = 0.49
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 515 SQTGSGKTLAYILPAIVHINN 577
           ++TGSGKT A+++P I H+ +
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS 133


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
 Frame = +1

Query: 319 EVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 498
           E E+ R +  V ++     +  + F +    + +Q+ +K MG++  T IQ +  P  ++G
Sbjct: 68  ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126

Query: 499 KNLV-A*PNGFRQNVGLHLAS-HCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
           ++++ A   G  + +   + +    +      R G G I  +++PTRELA QI  VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVI--IISPTRELALQIFGVAKE 183



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +2

Query: 515 SQTGSGKTLAYILPAI 562
           ++TGSGKTLA+++P I
Sbjct: 133 AKTGSGKTLAFLIPTI 148


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +1

Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHLASHCA 567
           F+  N    + +G+  +G++ PT IQ +  P+A+ GK++V A   G  +     +     
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVP--IL 318

Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVA 663
            +     ++      L+L PTRELA Q   VA
Sbjct: 319 ERLLYRPKKVPTTRVLILCPTRELAMQCHSVA 350



 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 521 TGSGKTLAYILPAIVHINNQP 583
           TGSGKT A+I+P +  +  +P
Sbjct: 305 TGSGKTAAFIVPILERLLYRP 325


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +1

Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVA*PNGFRQNVGLHLASHC 564
           FEE      + +G+ +M +++P+ IQ +  P+ +S   +N++    G  Q+     A+  
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMI----GQSQSGTGKTAAFA 171

Query: 565 AHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
                        P A+ LAP+RELA+QI  V  +
Sbjct: 172 LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTE 206


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 32.7 bits (71), Expect = 0.053
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 442 GYKEPTPIQAQGWPIAMSGKNLVA*PN---GFRQNVGLHLASHCAHK*PTAIRRGDGPI- 609
           G+ +P PIQ+   P A  G +++   +   G     G+ +  HC       +R  D    
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-------LRNVDAKYV 193

Query: 610 -ALVLAPTRELAQQIQQ 657
            ALV+APTRELA QI Q
Sbjct: 194 QALVVAPTRELAHQICQ 210


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 515 SQTGSGKTLAYILPAIVHINNQP 583
           +QTGSGKTLAY+LP +  +   P
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLP 207



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 592 RGDGPIALVLAPTRELAQQIQQVA 663
           R  G  A+++APTREL QQI  VA
Sbjct: 213 RTSGIYAVIMAPTRELCQQIYNVA 236


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
 Frame = +1

Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQ-QGVKTMGYKEPTP 462
           P P++ ++   +++    K +  V+G   +NP    EE  FP+ +  + +K     E T 
Sbjct: 18  PQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71

Query: 463 IQAQGWPIAMSGKNLVA*-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTREL 639
           IQ    P   S ++L+A  P G  + +          K    +    G  A+++APTREL
Sbjct: 72  IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFP--ILQK--LQLHVPGGYRAIIVAPTREL 127

Query: 640 AQQIQQVA 663
            +QI + A
Sbjct: 128 CEQIYRQA 135



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 521 TGSGKTLAYILPAI 562
           TGSGKT+AY+ P +
Sbjct: 92  TGSGKTIAYLFPIL 105


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
 Frame = +1

Query: 304 KRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
           K    E+EE  ++ E     V+      +F E       +  +K   +   T IQ Q  P
Sbjct: 18  KEEEEEIEELNSQIEALSETVD------HFAELPLTQPTKSALKNAHFITLTEIQKQCIP 71

Query: 484 IAMSGKNLV-A*PNGFRQNVG--LHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQ 648
            A+ G++++ A   G  + +   + L  +   K  T++   DG  ALV++PTRELA Q
Sbjct: 72  SALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL---DGLGALVISPTRELAIQ 126



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +2

Query: 515 SQTGSGKTLAYILPAIVHI 571
           ++TGSGKTLA+I+P I ++
Sbjct: 83  AKTGSGKTLAFIVPLIENL 101


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -3

Query: 244 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 71
           P   S V PS   F  ++   S +S AT+AK  +      +S KF       +  +  T 
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201

Query: 70  HDYFSDLVEDVYLNYGFFLTQG 5
           H+Y+++LV+    ++  F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +1

Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
           F +     ++   +K +   EPT IQ       + G+N +    G +   G   A+    
Sbjct: 9   FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIG---GAKTGSG-KTAAFALP 64

Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQI-QQVAA 666
                 +   G  AL+L PTRELA QI +Q AA
Sbjct: 65  IIEKWSKDPSGIFALILTPTRELAIQIDEQFAA 97


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 521 TGSGKTLAYILPAI 562
           TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 524 GSGKTLAYILPAIVHINNQPLFGEVMVRLLWSWRLPE 634
           GSG+TLA + P ++  +N         + LW+W L E
Sbjct: 842 GSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLLGE 878


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 474 LSLNGRRFFVTHCLYTLLHIIRKICFFKVLSRIMYLNATYSYLVFI 337
           LS +   FF    L TL      I  F +L   +YL ++Y +++F+
Sbjct: 280 LSRSSISFFTVPYLRTLAITQFIILLFTILQSALYLTSSYHFVLFL 325


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 313 PYEVEEYRNKHEVTVS 360
           PYE++ YRNKH   +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 641 HNKFSKLLQIFGHTSYVRNTC 703
           H K+ K+ ++ GHT  +R+ C
Sbjct: 202 HGKWKKVAELPGHTDLIRDIC 222


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 521  TGSGKTLAYILPAIVHINNQPLFGEVM 601
            TG GK+L++++PA++    Q   G+VM
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVM 1240


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 521  TGSGKTLAYILPAIVHINNQPLFGEVM 601
            TG GK+L++++PA++    Q   G+VM
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVM 1240


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 453 FFVTHCLYTLLHIIRKICFFKVLSRIMYLNATYSYLVFISIL 328
           FF     Y  ++ I+  CFF  ++R      T+S +VF  ++
Sbjct: 16  FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = -3

Query: 442 PLSLHLVAHNQENL--LLQSIE 383
           PL LH+V+HN+++L   LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,662
Number of Sequences: 5004
Number of extensions: 62969
Number of successful extensions: 252
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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