BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20985 (705 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 125 7e-30 SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 69 7e-13 SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 59 5e-10 SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 48 1e-06 SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 47 3e-06 SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 2e-05 SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 44 3e-05 SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 43 4e-05 SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 43 5e-05 SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 41 2e-04 SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 39 6e-04 SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.001 SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.002 SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.006 SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 35 0.010 SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 33 0.053 SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 32 0.092 SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 29 0.49 SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 29 0.49 SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.1 SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 28 1.1 SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.6 SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 27 2.6 SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 26 4.6 SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.6 SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 6.0 SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.0 SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.0 SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.0 SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.0 >SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosaccharomyces pombe|chr 2|||Manual Length = 550 Score = 125 bits (301), Expect = 7e-30 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 1/140 (0%) Frame = +1 Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVK 435 L PF K+FY H V RS EV EYR + E+ V G+ V P FEEA FP+YV + VK Sbjct: 79 LIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK 138 Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIA 612 +G++ PTPIQ Q WP+AMSG+++V G + + L + + GDGPI Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIV 198 Query: 613 LVLAPTRELAQQIQQVAADF 672 LVLAPTRELA QIQQ F Sbjct: 199 LVLAPTRELAVQIQQECTKF 218 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 68.9 bits (161), Expect = 7e-13 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Frame = +1 Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPTQYFEEANFPDYVQQGVK 435 + F K+FY + SP EV+E R + + + G++ P + + + Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434 Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIA 612 ++GY++PT IQAQ P SG++++ G + + L K ++ G+GPIA Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIA 494 Query: 613 LVLAPTRELAQQI 651 +++ PTRELA QI Sbjct: 495 IIMTPTRELAVQI 507 >SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 59.3 bits (137), Expect = 5e-10 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 4/111 (3%) Frame = +1 Query: 334 RNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513 + + +++ G ++ NP + +EEA P + + +K + YKEP+ IQ P+ + K+L+ Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291 Query: 514 -*PNGFRQNVGLHLASHCA-HK*P--TAIRRGDGPIALVLAPTRELAQQIQ 654 G + + A K P T GP A+VLAPTRELAQQIQ Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342 Score = 31.5 bits (68), Expect = 0.12 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = +2 Query: 515 SQTGSGKTLAYILPAIVHINNQPLFGEVMVRL 610 ++TGSGKT A+I+P I+ I+ P E + L Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHL 324 >SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Sum3|Schizosaccharomyces pombe|chr 3|||Manual Length = 636 Score = 48.4 bits (110), Expect = 1e-06 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 14/122 (11%) Frame = +1 Query: 349 VTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNG 525 V VSG ++ P F ++ Q +K GY +PTP+Q PI SG++L+A G Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216 Query: 526 FRQNVG--LHLASHCAHK*PTAI----RRGDG-------PIALVLAPTRELAQQIQQVAA 666 + G + S K P A+ G G P L+LAPTREL QI + + Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276 Query: 667 DF 672 F Sbjct: 277 KF 278 >SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharomyces pombe|chr 3|||Manual Length = 595 Score = 46.8 bits (106), Expect = 3e-06 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 2/116 (1%) Frame = +1 Query: 361 GVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNV 540 G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LVA Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65 Query: 541 GLHLAS--HCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHILCS*HV 702 +L K G AL+L PTRELAQQ+ V CS H+ Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTA--FCSKHI 119 >SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 44.0 bits (99), Expect = 2e-05 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = +1 Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*P-NGFRQNVGLHLASHCA 567 F+ N +++ V G+K+ TP+QA P+ + K+LV G + + L C Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP--CF 60 Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669 K G AL++APTRELA QI V + Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKE 94 >SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 578 Score = 43.6 bits (98), Expect = 3e-05 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 4/112 (3%) Frame = +1 Query: 325 EEYRNKHEVTVSGVEVHN---PTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 495 + Y KH ++ + + P F+E + +++G+K YKEPTPIQA WP ++ Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201 Query: 496 GKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQ 648 G+++V G + V + + P LV++PTRELA Q Sbjct: 202 GRDVVGIAETGSGKTVAFGIPA--LQYLNGLSDNKSVPRVLVVSPTRELAIQ 251 Score = 28.7 bits (61), Expect = 0.86 Identities = 10/20 (50%), Positives = 18/20 (90%) Frame = +2 Query: 515 SQTGSGKTLAYILPAIVHIN 574 ++TGSGKT+A+ +PA+ ++N Sbjct: 209 AETGSGKTVAFGIPALQYLN 228 >SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 43.2 bits (97), Expect = 4e-05 Identities = 34/127 (26%), Positives = 55/127 (43%) Frame = +1 Query: 325 EEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504 +E E+T S E N FEE N + + +G+ GY+ P+ +Q++ G++ Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60 Query: 505 LVA*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684 ++A + ++R AL+L+PTRELA QIQ V H+ Sbjct: 61 VIAQAQSGTGKTAT-FSIGILQSIDLSVRDTQ---ALILSPTRELAVQIQNVVLALGDHM 116 Query: 685 LCS*HVC 705 H C Sbjct: 117 NVQCHAC 123 >SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 42.7 bits (96), Expect = 5e-05 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Frame = +1 Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCA 567 FE+ + G+ G++ P+PIQ + PIA+SG++++A NG + + S Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPS--L 103 Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684 K T + L+L PTRELA Q QV H+ Sbjct: 104 EKVDTKKSKIQ---TLILVPTRELALQTSQVCKTLGKHM 139 >SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 465 Score = 40.7 bits (91), Expect = 2e-04 Identities = 26/89 (29%), Positives = 43/89 (48%) Frame = +1 Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570 F+E D + + + +G+K PTPIQ + P+ ++ ++++ G Q A+ Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI----GLAQTGSGKTAAFALP 103 Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQ 657 A+VLAPTRELA QI + Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQISE 132 >SPAC1006.07 |||translation initiation factor eIF4A|Schizosaccharomyces pombe|chr 1|||Manual Length = 392 Score = 39.1 bits (87), Expect = 6e-04 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Frame = +1 Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKNLVA*PNGFRQNVGLHLASHCA 567 F++ N + +G+ G++ P+ IQ + PI L +G + ++ Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSIS--VL 78 Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHILCS*HVC 705 K T++++ AL+LAPTRELAQQIQ+V + H C Sbjct: 79 QKIDTSLKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHAC 121 >SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosaccharomyces pombe|chr 1|||Manual Length = 848 Score = 38.3 bits (85), Expect = 0.001 Identities = 25/94 (26%), Positives = 40/94 (42%) Frame = +1 Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570 F+ + + + G+K PTPIQ + P+ + G+++V + H Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130 Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAADF 672 T AL+L+P RELA Q +V DF Sbjct: 131 LKSTL--ANSNTRALILSPNRELALQTVKVVKDF 162 Score = 29.5 bits (63), Expect = 0.49 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = +2 Query: 515 SQTGSGKTLAYILPAIVHINN 577 ++TGSGKT A+++P I H+ + Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS 133 >SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 578 Score = 37.1 bits (82), Expect = 0.002 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Frame = +1 Query: 319 EVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 498 E E+ R + V ++ + + F + + +Q+ +K MG++ T IQ + P ++G Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126 Query: 499 KNLV-A*PNGFRQNVGLHLAS-HCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669 ++++ A G + + + + + R G G I +++PTRELA QI VA + Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVI--IISPTRELALQIFGVAKE 183 Score = 27.9 bits (59), Expect = 1.5 Identities = 10/16 (62%), Positives = 15/16 (93%) Frame = +2 Query: 515 SQTGSGKTLAYILPAI 562 ++TGSGKTLA+++P I Sbjct: 133 AKTGSGKTLAFLIPTI 148 >SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 754 Score = 35.9 bits (79), Expect = 0.006 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Frame = +1 Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHLASHCA 567 F+ N + +G+ +G++ PT IQ + P+A+ GK++V A G + + Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVP--IL 318 Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVA 663 + ++ L+L PTRELA Q VA Sbjct: 319 ERLLYRPKKVPTTRVLILCPTRELAMQCHSVA 350 Score = 25.4 bits (53), Expect = 8.0 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +2 Query: 521 TGSGKTLAYILPAIVHINNQP 583 TGSGKT A+I+P + + +P Sbjct: 305 TGSGKTAAFIVPILERLLYRP 325 >SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces pombe|chr 2|||Manual Length = 503 Score = 35.1 bits (77), Expect = 0.010 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = +1 Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVA*PNGFRQNVGLHLASHC 564 FEE + +G+ +M +++P+ IQ + P+ +S +N++ G Q+ A+ Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMI----GQSQSGTGKTAAFA 171 Query: 565 AHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669 P A+ LAP+RELA+QI V + Sbjct: 172 LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTE 206 >SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 648 Score = 32.7 bits (71), Expect = 0.053 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +1 Query: 442 GYKEPTPIQAQGWPIAMSGKNLVA*PN---GFRQNVGLHLASHCAHK*PTAIRRGDGPI- 609 G+ +P PIQ+ P A G +++ + G G+ + HC +R D Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-------LRNVDAKYV 193 Query: 610 -ALVLAPTRELAQQIQQ 657 ALV+APTRELA QI Q Sbjct: 194 QALVVAPTRELAHQICQ 210 >SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 709 Score = 31.9 bits (69), Expect = 0.092 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +2 Query: 515 SQTGSGKTLAYILPAIVHINNQP 583 +QTGSGKTLAY+LP + + P Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLP 207 Score = 30.7 bits (66), Expect = 0.21 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +1 Query: 592 RGDGPIALVLAPTRELAQQIQQVA 663 R G A+++APTREL QQI VA Sbjct: 213 RTSGIYAVIMAPTRELCQQIYNVA 236 >SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 481 Score = 29.5 bits (63), Expect = 0.49 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 2/128 (1%) Frame = +1 Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQ-QGVKTMGYKEPTP 462 P P++ ++ +++ K + V+G +NP EE FP+ + + +K E T Sbjct: 18 PQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71 Query: 463 IQAQGWPIAMSGKNLVA*-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTREL 639 IQ P S ++L+A P G + + K + G A+++APTREL Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFP--ILQK--LQLHVPGGYRAIIVAPTREL 127 Query: 640 AQQIQQVA 663 +QI + A Sbjct: 128 CEQIYRQA 135 Score = 25.8 bits (54), Expect = 6.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 521 TGSGKTLAYILPAI 562 TGSGKT+AY+ P + Sbjct: 92 TGSGKTIAYLFPIL 105 >SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 735 Score = 29.5 bits (63), Expect = 0.49 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Frame = +1 Query: 304 KRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483 K E+EE ++ E V+ +F E + +K + T IQ Q P Sbjct: 18 KEEEEEIEELNSQIEALSETVD------HFAELPLTQPTKSALKNAHFITLTEIQKQCIP 71 Query: 484 IAMSGKNLV-A*PNGFRQNVG--LHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQ 648 A+ G++++ A G + + + L + K T++ DG ALV++PTRELA Q Sbjct: 72 SALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL---DGLGALVISPTRELAIQ 126 Score = 28.3 bits (60), Expect = 1.1 Identities = 11/19 (57%), Positives = 17/19 (89%) Frame = +2 Query: 515 SQTGSGKTLAYILPAIVHI 571 ++TGSGKTLA+I+P I ++ Sbjct: 83 AKTGSGKTLAFIVPLIENL 101 >SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosaccharomyces pombe|chr 2|||Manual Length = 545 Score = 28.3 bits (60), Expect = 1.1 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Frame = -3 Query: 244 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 71 P S V PS F ++ S +S AT+AK + +S KF + + T Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201 Query: 70 HDYFSDLVEDVYLNYGFFLTQG 5 H+Y+++LV+ ++ F +QG Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223 >SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 453 Score = 28.3 bits (60), Expect = 1.1 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Frame = +1 Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570 F + ++ +K + EPT IQ + G+N + G + G A+ Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIG---GAKTGSG-KTAAFALP 64 Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQI-QQVAA 666 + G AL+L PTRELA QI +Q AA Sbjct: 65 IIEKWSKDPSGIFALILTPTRELAIQIDEQFAA 97 >SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 604 Score = 27.1 bits (57), Expect = 2.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +2 Query: 521 TGSGKTLAYILPAI 562 TGSGKTL+Y++P + Sbjct: 182 TGSGKTLSYVIPIV 195 >SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1004 Score = 27.1 bits (57), Expect = 2.6 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 524 GSGKTLAYILPAIVHINNQPLFGEVMVRLLWSWRLPE 634 GSG+TLA + P ++ +N + LW+W L E Sbjct: 842 GSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLLGE 878 >SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 396 Score = 26.2 bits (55), Expect = 4.6 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -1 Query: 474 LSLNGRRFFVTHCLYTLLHIIRKICFFKVLSRIMYLNATYSYLVFI 337 LS + FF L TL I F +L +YL ++Y +++F+ Sbjct: 280 LSRSSISFFTVPYLRTLAITQFIILLFTILQSALYLTSSYHFVLFL 325 >SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium transporting Cta4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1211 Score = 26.2 bits (55), Expect = 4.6 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 313 PYEVEEYRNKHEVTVS 360 PYE++ YRNKH +S Sbjct: 253 PYEIQVYRNKHWFPIS 268 >SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 339 Score = 25.8 bits (54), Expect = 6.0 Identities = 8/21 (38%), Positives = 14/21 (66%) Frame = +2 Query: 641 HNKFSKLLQIFGHTSYVRNTC 703 H K+ K+ ++ GHT +R+ C Sbjct: 202 HGKWKKVAELPGHTDLIRDIC 222 >SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 1||Partial|Manual Length = 1887 Score = 25.8 bits (54), Expect = 6.0 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 521 TGSGKTLAYILPAIVHINNQPLFGEVM 601 TG GK+L++++PA++ Q G+VM Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVM 1240 >SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 25.8 bits (54), Expect = 6.0 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 521 TGSGKTLAYILPAIVHINNQPLFGEVM 601 TG GK+L++++PA++ Q G+VM Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVM 1240 >SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 105 Score = 25.4 bits (53), Expect = 8.0 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -1 Query: 453 FFVTHCLYTLLHIIRKICFFKVLSRIMYLNATYSYLVFISIL 328 FF Y ++ I+ CFF ++R T+S +VF ++ Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57 >SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 534 Score = 25.4 bits (53), Expect = 8.0 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%) Frame = -3 Query: 442 PLSLHLVAHNQENL--LLQSIE 383 PL LH+V+HN+++L LQ IE Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,876,662 Number of Sequences: 5004 Number of extensions: 62969 Number of successful extensions: 252 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 208 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 236 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 327172622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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