Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20985
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 125 7e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 69 7e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 59 5e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 48 1e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 47 3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 2e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 44 3e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 43 4e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 43 5e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 41 2e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 39 6e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.001
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.002
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.006
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 35 0.010
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 33 0.053
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 32 0.092
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 29 0.49
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 29 0.49
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.1
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 28 1.1
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.6
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 26 4.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.6
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 6.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.0
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 125 bits (301), Expect = 7e-30
Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVK 435
L PF K+FY H V RS EV EYR + E+ V G+ V P FEEA FP+YV + VK
Sbjct: 79 LIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK 138
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIA 612
+G++ PTPIQ Q WP+AMSG+++V G + + L + + GDGPI
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIV 198
Query: 613 LVLAPTRELAQQIQQVAADF 672
LVLAPTRELA QIQQ F
Sbjct: 199 LVLAPTRELAVQIQQECTKF 218
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 68.9 bits (161), Expect = 7e-13
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPTQYFEEANFPDYVQQGVK 435
+ F K+FY + SP EV+E R + + + G++ P + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIA 612
++GY++PT IQAQ P SG++++ G + + L K ++ G+GPIA
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIA 494
Query: 613 LVLAPTRELAQQI 651
+++ PTRELA QI
Sbjct: 495 IIMTPTRELAVQI 507
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.3 bits (137), Expect = 5e-10
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
+ + +++ G ++ NP + +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 514 -*PNGFRQNVGLHLASHCA-HK*P--TAIRRGDGPIALVLAPTRELAQQIQ 654
G + + A K P T GP A+VLAPTRELAQQIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPLFGEVMVRL 610
++TGSGKT A+I+P I+ I+ P E + L
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHL 324
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 48.4 bits (110), Expect = 1e-06
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Frame = +1
Query: 349 VTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNG 525
V VSG ++ P F ++ Q +K GY +PTP+Q PI SG++L+A G
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 526 FRQNVG--LHLASHCAHK*PTAI----RRGDG-------PIALVLAPTRELAQQIQQVAA 666
+ G + S K P A+ G G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 667 DF 672
F
Sbjct: 277 KF 278
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.8 bits (106), Expect = 3e-06
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +1
Query: 361 GVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNV 540
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LVA
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 541 GLHLAS--HCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHILCS*HV 702
+L K G AL+L PTRELAQQ+ V CS H+
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTA--FCSKHI 119
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 44.0 bits (99), Expect = 2e-05
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*P-NGFRQNVGLHLASHCA 567
F+ N +++ V G+K+ TP+QA P+ + K+LV G + + L C
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP--CF 60
Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
K G AL++APTRELA QI V +
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKE 94
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 43.6 bits (98), Expect = 3e-05
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHN---PTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 495
+ Y KH ++ + + P F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 496 GKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQ 648
G+++V G + V + + P LV++PTRELA Q
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPA--LQYLNGLSDNKSVPRVLVVSPTRELAIQ 251
Score = 28.7 bits (61), Expect = 0.86
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHIN 574
++TGSGKT+A+ +PA+ ++N
Sbjct: 209 AETGSGKTVAFGIPALQYLN 228
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 43.2 bits (97), Expect = 4e-05
Identities = 34/127 (26%), Positives = 55/127 (43%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
+E E+T S E N FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 505 LVA*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684
++A + ++R AL+L+PTRELA QIQ V H+
Sbjct: 61 VIAQAQSGTGKTAT-FSIGILQSIDLSVRDTQ---ALILSPTRELAVQIQNVVLALGDHM 116
Query: 685 LCS*HVC 705
H C
Sbjct: 117 NVQCHAC 123
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 42.7 bits (96), Expect = 5e-05
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCA 567
FE+ + G+ G++ P+PIQ + PIA+SG++++A NG + + S
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPS--L 103
Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684
K T + L+L PTRELA Q QV H+
Sbjct: 104 EKVDTKKSKIQ---TLILVPTRELALQTSQVCKTLGKHM 139
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/89 (29%), Positives = 43/89 (48%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
F+E D + + + +G+K PTPIQ + P+ ++ ++++ G Q A+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI----GLAQTGSGKTAAFALP 103
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQ 657
A+VLAPTRELA QI +
Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQISE 132
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 39.1 bits (87), Expect = 6e-04
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKNLVA*PNGFRQNVGLHLASHCA 567
F++ N + +G+ G++ P+ IQ + PI L +G + ++
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSIS--VL 78
Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHILCS*HVC 705
K T++++ AL+LAPTRELAQQIQ+V + H C
Sbjct: 79 QKIDTSLKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHAC 121
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/94 (26%), Positives = 40/94 (42%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
F+ + + + G+K PTPIQ + P+ + G+++V + H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAADF 672
T AL+L+P RELA Q +V DF
Sbjct: 131 LKSTL--ANSNTRALILSPNRELALQTVKVVKDF 162
Score = 29.5 bits (63), Expect = 0.49
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINN 577
++TGSGKT A+++P I H+ +
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS 133
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.1 bits (82), Expect = 0.002
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 498
E E+ R + V ++ + + F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 499 KNLV-A*PNGFRQNVGLHLAS-HCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
++++ A G + + + + + R G G I +++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVI--IISPTRELALQIFGVAKE 183
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAI 562
++TGSGKTLA+++P I
Sbjct: 133 AKTGSGKTLAFLIPTI 148
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 35.9 bits (79), Expect = 0.006
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHLASHCA 567
F+ N + +G+ +G++ PT IQ + P+A+ GK++V A G + +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVP--IL 318
Query: 568 HK*PTAIRRGDGPIALVLAPTRELAQQIQQVA 663
+ ++ L+L PTRELA Q VA
Sbjct: 319 ERLLYRPKKVPTTRVLILCPTRELAMQCHSVA 350
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQP 583
TGSGKT A+I+P + + +P
Sbjct: 305 TGSGKTAAFIVPILERLLYRP 325
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 35.1 bits (77), Expect = 0.010
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVA*PNGFRQNVGLHLASHC 564
FEE + +G+ +M +++P+ IQ + P+ +S +N++ G Q+ A+
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMI----GQSQSGTGKTAAFA 171
Query: 565 AHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
P A+ LAP+RELA+QI V +
Sbjct: 172 LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTE 206
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 32.7 bits (71), Expect = 0.053
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 442 GYKEPTPIQAQGWPIAMSGKNLVA*PN---GFRQNVGLHLASHCAHK*PTAIRRGDGPI- 609
G+ +P PIQ+ P A G +++ + G G+ + HC +R D
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-------LRNVDAKYV 193
Query: 610 -ALVLAPTRELAQQIQQ 657
ALV+APTRELA QI Q
Sbjct: 194 QALVVAPTRELAHQICQ 210
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.092
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQP 583
+QTGSGKTLAY+LP + + P
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLP 207
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 592 RGDGPIALVLAPTRELAQQIQQVA 663
R G A+++APTREL QQI VA
Sbjct: 213 RTSGIYAVIMAPTRELCQQIYNVA 236
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 29.5 bits (63), Expect = 0.49
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQ-QGVKTMGYKEPTP 462
P P++ ++ +++ K + V+G +NP EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 463 IQAQGWPIAMSGKNLVA*-PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTREL 639
IQ P S ++L+A P G + + K + G A+++APTREL
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFP--ILQK--LQLHVPGGYRAIIVAPTREL 127
Query: 640 AQQIQQVA 663
+QI + A
Sbjct: 128 CEQIYRQA 135
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 521 TGSGKTLAYILPAI 562
TGSGKT+AY+ P +
Sbjct: 92 TGSGKTIAYLFPIL 105
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 29.5 bits (63), Expect = 0.49
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +1
Query: 304 KRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
K E+EE ++ E V+ +F E + +K + T IQ Q P
Sbjct: 18 KEEEEEIEELNSQIEALSETVD------HFAELPLTQPTKSALKNAHFITLTEIQKQCIP 71
Query: 484 IAMSGKNLV-A*PNGFRQNVG--LHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQ 648
A+ G++++ A G + + + L + K T++ DG ALV++PTRELA Q
Sbjct: 72 SALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL---DGLGALVISPTRELAIQ 126
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI 571
++TGSGKTLA+I+P I ++
Sbjct: 83 AKTGSGKTLAFIVPLIENL 101
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 244 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 71
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 70 HDYFSDLVEDVYLNYGFFLTQG 5
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 28.3 bits (60), Expect = 1.1
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
F + ++ +K + EPT IQ + G+N + G + G A+
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIG---GAKTGSG-KTAAFALP 64
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQI-QQVAA 666
+ G AL+L PTRELA QI +Q AA
Sbjct: 65 IIEKWSKDPSGIFALILTPTRELAIQIDEQFAA 97
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 521 TGSGKTLAYILPAI 562
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 524 GSGKTLAYILPAIVHINNQPLFGEVMVRLLWSWRLPE 634
GSG+TLA + P ++ +N + LW+W L E
Sbjct: 842 GSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLLGE 878
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 474 LSLNGRRFFVTHCLYTLLHIIRKICFFKVLSRIMYLNATYSYLVFI 337
LS + FF L TL I F +L +YL ++Y +++F+
Sbjct: 280 LSRSSISFFTVPYLRTLAITQFIILLFTILQSALYLTSSYHFVLFL 325
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 313 PYEVEEYRNKHEVTVS 360
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 641 HNKFSKLLQIFGHTSYVRNTC 703
H K+ K+ ++ GHT +R+ C
Sbjct: 202 HGKWKKVAELPGHTDLIRDIC 222
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPLFGEVM 601
TG GK+L++++PA++ Q G+VM
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVM 1240
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPLFGEVM 601
TG GK+L++++PA++ Q G+VM
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVM 1240
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 453 FFVTHCLYTLLHIIRKICFFKVLSRIMYLNATYSYLVFISIL 328
FF Y ++ I+ CFF ++R T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 442 PLSLHLVAHNQENL--LLQSIE 383
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,662
Number of Sequences: 5004
Number of extensions: 62969
Number of successful extensions: 252
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -