Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20985
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 2e-20
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 77 1e-14
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 7e-12
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 67 1e-11
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 64 1e-10
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 58 9e-09
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 1e-05
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 4e-04
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 42 5e-04
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 42 5e-04
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 38 0.010
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 35 0.056
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.074
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 34 0.13
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 33 0.17
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 31 0.69
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 31 0.91
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 30 2.1
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 29 3.7
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08) 29 4.9
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 28 6.4
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 28 8.5
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 96.3 bits (229), Expect = 2e-20
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKT 438
+PFNKNFY+ HP + K+S E+++ R K + VSG P F F + + ++
Sbjct: 475 KPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRK 534
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH-K*PTAIRRGDGPIAL 615
+ Y +PT IQ Q PIA+SG++++ L H ++ GDGPI L
Sbjct: 535 LEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVL 594
Query: 616 VLAPTRELAQQIQQVAADF 672
+ APTREL QQI A F
Sbjct: 595 ICAPTRELCQQIYTEARRF 613
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 77.0 bits (181), Expect = 1e-14
Identities = 50/125 (40%), Positives = 64/125 (51%)
Frame = +1
Query: 307 RSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 486
R +EV+ YR ++TV+G V P FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ---F 113
Query: 487 AMSGKNLVA*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAA 666
+ G H H+ ++ GDGPI LVL PTRELAQQ+Q+VA
Sbjct: 114 ILPG------------------IVHINHQ--PLLQPGDGPIVLVLCPTRELAQQVQEVAY 153
Query: 667 DFWTH 681
H
Sbjct: 154 SVGKH 158
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 545 YILPAIVHINNQPL 586
+ILP IVHIN+QPL
Sbjct: 113 FILPGIVHINHQPL 126
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 60.5 bits (140), Expect(2) = 7e-12
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPTQYFEEANFPDYVQQGVK 435
QPF K+FY P + K +P E +E+R E + V G P + + + + +K
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA 513
Y++PTPIQAQ P+ MSG++++A
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIA 147
Score = 27.5 bits (58), Expect(2) = 7e-12
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 586 IRRGDGPIALVLAPTRELAQQIQQVAADF 672
I G IA+V+ PTRELA QI + F
Sbjct: 139 IMSGRDMIAIVMTPTRELAIQIHRECKKF 167
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 66.9 bits (156), Expect = 1e-11
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Frame = +1
Query: 265 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMG 444
F ++YD + V + S V+E R K+ + + G + P + F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 445 YKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVL 621
++ PTPIQ Q MSG++++ G + + L + GD P+AL+L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
Query: 622 APTRELAQQIQQVAADFWTHILC 690
PTREL QQ+ ++ I C
Sbjct: 152 TPTRELMQQVFMNVSEMLDVIRC 174
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 63.7 bits (148), Expect = 1e-10
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Frame = +1
Query: 331 YRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+R ++ G + P + ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 511 A*P---NGFRQNVGLHLASHCAHK*PTAIRRGD---GPIALVLAPTRELAQQIQQVAADF 672
+G + L P R D GP AL+LAPTRELAQQI++ F
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGL-PKIERDNDADQGPYALILAPTRELAQQIEEEILKF 201
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPT 459
Y HPT+ + +V++ R+K E+ V G V +P F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 460 PIQAQGWPIAMSGKNLV 510
PIQ Q P+ +SG++++
Sbjct: 221 PIQMQVLPVLLSGRDVM 237
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 52.4 bits (120), Expect = 3e-07
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Frame = +1
Query: 355 VSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQ 534
VSG F E F + + + GY+ PTP+Q PI M+G++L+A Q
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMA----CAQ 524
Query: 535 NVGLHLASHCAHK*PTAIRRG-----DGPIALVLAPTRELAQQIQQVAADFWTHILCS*H 699
A++ + I++G P+AL +APTRELA+QI A F H
Sbjct: 525 TGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIKVC 584
Query: 700 VC 705
VC
Sbjct: 585 VC 586
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 48.4 bits (110), Expect = 6e-06
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
E+Y ++ EV VSG FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 505 LVA-*PNGFRQNVGLHL----ASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
++A G + L + A ++ P A+ +APTRELA QI A
Sbjct: 751 VMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARK 810
Query: 670 F 672
F
Sbjct: 811 F 811
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPL 586
+QTGSGKT A++LP + + N L
Sbjct: 755 AQTGSGKTAAFLLPVMTSMMNAGL 778
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPTQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 486
++ +R++ + V G +V +P + F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 487 AMSG 498
G
Sbjct: 197 MAHG 200
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 504
E+Y ++ EV VSG FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 505 LVA 513
++A
Sbjct: 174 VMA 176
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/98 (27%), Positives = 46/98 (46%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
FE+ + G+ G+ +P+PIQ + P+A++G++++A +L
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684
T + ALVL PTRELA Q Q+ + H+
Sbjct: 109 TDTTK----NCIQALVLVPTRELALQTSQICIELGKHM 142
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/98 (27%), Positives = 46/98 (46%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
FE+ + G+ G+ +P+PIQ + P+A++G++++A +L
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684
T + ALVL PTRELA Q Q+ + H+
Sbjct: 109 TDTTK----NCIQALVLVPTRELALQTSQICIELGKHM 142
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/91 (29%), Positives = 43/91 (47%)
Frame = +1
Query: 433 KTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIA 612
+T G+++P+ IQ + + G++++A S T +R P A
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSIS-VLQAIDTQLRE---PQA 68
Query: 613 LVLAPTRELAQQIQQVAADFWTHILCS*HVC 705
LVL+PTRELA QIQ+V ++ H C
Sbjct: 69 LVLSPTRELANQIQKVVLALGDYMSVQCHAC 99
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/34 (61%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +1
Query: 610 ALVLAPTRELAQQIQQV--AADFWTHILCS*HVC 705
ALVLAPTRELAQQIQ+V A + H+ C H C
Sbjct: 162 ALVLAPTRELAQQIQKVVLALGDYMHVKC--HAC 193
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 37.5 bits (83), Expect = 0.010
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +1
Query: 427 GVKTMGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVG--LHLASHCAHK*PTAIRRG 597
G+ G+ PT IQ QG P+A+SG++++ A G + + + + + T++
Sbjct: 64 GLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSM--- 120
Query: 598 DGPIALVLAPTRELAQQIQQV 660
DG ALV++PTRELA Q +V
Sbjct: 121 DGLGALVISPTRELAYQTFEV 141
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 35.1 bits (77), Expect = 0.056
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 604 PIALVLAPTRELAQQIQQVAADFWTHILCS*HVC 705
P ALVL+PTRELA QIQ+V ++ H C
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHAC 37
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 34.7 bits (76), Expect = 0.074
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHL-ASHCAHK*PTAIRRG 597
QG+K MG+ T IQ + + G++L+ A G + + + +K R G
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNG 644
Query: 598 DGPIALVLAPTRELAQQIQQVAADFWTH 681
G I +++PTREL+ Q VA D H
Sbjct: 645 TGVI--IISPTRELSLQTYGVARDLLKH 670
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 33.9 bits (74), Expect = 0.13
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Frame = +1
Query: 340 KHEVTVSGVEVHNP---TQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--N 504
KHEV V + +P + FEE +++GV MG+ +P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 505 LVA*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTH 681
++A + + + T P + L+PT ELA+Q +VA H
Sbjct: 145 MIAQSQSGTGKTAAFVLTMLSRVDATK----PYPQVICLSPTYELARQTGKVAEAMGKH 199
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 33.5 bits (73), Expect = 0.17
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*P---NGFRQNVGLHLASHCAHK*PTAIRR 594
+ V +G+ PTPIQA P+A+ GK++ A G L + ++ PT +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYR-PT---Q 78
Query: 595 GDGPIALVLAPTRELAQQ 648
LV+ PTRELA Q
Sbjct: 79 SPAIRVLVITPTRELAIQ 96
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + + + V GYK+PTP+Q PI ++L+A
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMA 917
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 589 RRGDGPIALVLAPTRELAQQI 651
+RG P LV+APTRELA+Q+
Sbjct: 143 KRGRAPKVLVMAPTRELAKQV 163
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 31.1 bits (67), Expect = 0.91
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +1
Query: 409 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAHK*PTAI 588
P V++ +K MG +P PIQ + P S K+L+ + G P+
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLL-----IKSETGT--GKSLVFLLPSVQ 220
Query: 589 RRGDGPIALVLAPTRELAQQI 651
G G +++ PTRELA Q+
Sbjct: 221 DPGRGYGTIIVVPTRELASQM 241
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPLFGEVMVRL 610
+QTGSGKTLAY+ P + + ++ RL
Sbjct: 422 AQTGSGKTLAYLAPLVHRLREDEERHGILARL 453
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +1
Query: 367 EVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 480
++H P + + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI 571
++TGSGKTLA+ +P I HI
Sbjct: 175 AETGSGKTLAFGIPIIQHI 193
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 197 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 87
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 313 PYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMG 444
P+E + + KH++ V+ VE + Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
Length = 816
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNK-HEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTP 462
P P V + S Y +Y H S ++ T + ++ P Y+QQ ++ +G
Sbjct: 341 PPPLVNQISQYNGSQYNQSLHYSLPSTFQISPVTPSLQPSSVPFYLQQDLEALGRISQPR 400
Query: 463 IQAQGWPIAMSGKNL 507
+ Q P+A SG+ +
Sbjct: 401 VSPQSRPLA-SGQQV 414
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 262 VGVNRIPIWASHVLPSREF 206
VGV I WAS++LPSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 325 EEYRNK-HEVTVSGVEVHNPTQYFEEANFPDY 417
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 524 GSGKTLAYILPAIVHINNQPLFGEV 598
GSGK LAY+LP I I ++ E+
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQEL 258
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,358,997
Number of Sequences: 59808
Number of extensions: 463290
Number of successful extensions: 1238
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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