Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20985
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 130 1e-30
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 116 1e-26
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 116 1e-26
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 91 5e-19
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 91 5e-19
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 91 5e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 89 3e-18
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 89 4e-18
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 88 5e-18
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 84 1e-16
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 70 1e-12
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 63 2e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 57 1e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 57 1e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 55 5e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 52 5e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 52 5e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 51 7e-07
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 48 5e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 47 1e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 46 2e-05
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 45 4e-05
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 43 2e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 43 2e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 42 3e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 42 3e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 5e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 41 0.001
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.001
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 40 0.002
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 40 0.002
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 40 0.002
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 40 0.002
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 38 0.005
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 38 0.009
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 36 0.026
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 36 0.035
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 36 0.035
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 35 0.046
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 35 0.060
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 35 0.060
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 35 0.060
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 34 0.080
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.18
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.18
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 33 0.24
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 33 0.24
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.24
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 32 0.43
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 31 0.98
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 30 1.3
At2g25460.1 68415.m03049 expressed protein 30 1.3
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 29 2.3
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 29 2.3
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 29 2.3
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.2
At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat... 28 6.9
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 9.2
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 27 9.2
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 27 9.2
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 27 9.2
At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger) fa... 27 9.2
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 130 bits (313), Expect = 1e-30
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVK 435
L PF KNFY P V + EVEEYR E+TV G ++ P + F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIA 612
G+ EPTPIQ+QGWP+AM G++L+ G + + L + + GDGPI
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIV 175
Query: 613 LVLAPTRELAQQIQQVAADF 672
LVLAPTRELA QIQQ A+ F
Sbjct: 176 LVLAPTRELAVQIQQEASKF 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 116 bits (280), Expect = 1e-26
Identities = 58/147 (39%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P + F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH-K*PTAIR 591
+ + + +G+ EPTPIQAQGWP+A+ G++L+ +L H +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 592 RGDGPIALVLAPTRELAQQIQQVAADF 672
+ DGPI L+LAPTRELA QIQ+ + F
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKF 261
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 116 bits (280), Expect = 1e-26
Identities = 58/147 (39%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P + F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH-K*PTAIR 591
+ + + +G+ EPTPIQAQGWP+A+ G++L+ +L H +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 592 RGDGPIALVLAPTRELAQQIQQVAADF 672
+ DGPI L+LAPTRELA QIQ+ + F
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKF 261
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 91.5 bits (217), Expect = 5e-19
Identities = 54/130 (41%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 642
QAQ WPIAM G+++VA G + +G +L H GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 643 QQIQQVAADF 672
QIQ+ A F
Sbjct: 244 TQIQEEAVKF 253
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 91.5 bits (217), Expect = 5e-19
Identities = 54/130 (41%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 642
QAQ WPIAM G+++VA G + +G +L H GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 643 QQIQQVAADF 672
QIQ+ A F
Sbjct: 244 TQIQEEAVKF 253
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 91.5 bits (217), Expect = 5e-19
Identities = 54/130 (41%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELA 642
QAQ WPIAM G+++VA G + +G +L H GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 643 QQIQQVAADF 672
QIQ+ A F
Sbjct: 244 TQIQEEAVKF 253
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 89.0 bits (211), Expect = 3e-18
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKT 438
+P NK+FY+ ++ + E +YR + + VSG +VH P + FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH-K*PTAIRRGDGPIAL 615
Y++PT IQ Q PI +SG++++ + H ++R +GPI +
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGV 305
Query: 616 VLAPTRELAQQIQQVAADF 672
+ APTRELA QI A F
Sbjct: 306 ICAPTRELAHQIFLEAKKF 324
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 88.6 bits (210), Expect = 4e-18
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + V YR + E+ V G +V P Q++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIAL 615
+ Y++P PIQAQ PI MSG++ + G + +G L K + GDGPI L
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGL 473
Query: 616 VLAPTRELAQQI 651
V+APTREL QQI
Sbjct: 474 VMAPTRELVQQI 485
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 88.2 bits (209), Expect = 5e-18
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + EV YR + E+ V G +V P +++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIAL 615
+ Y++P PIQ Q PI MSG++ + G + +G L K + GDGPI L
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGL 606
Query: 616 VLAPTRELAQQI 651
V+APTREL QQI
Sbjct: 607 VMAPTRELVQQI 618
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 83.8 bits (198), Expect = 1e-16
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Frame = +1
Query: 268 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVK 435
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIA 612
+ G+ PTPIQAQ WPIA+ +++VA G + +G + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 613 LVLAPTRELAQQIQQVAADF 672
L+LAPTRELA QIQ A F
Sbjct: 511 LILAPTRELATQIQDEALRF 530
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 70.1 bits (164), Expect = 1e-12
Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Frame = +1
Query: 244 GFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQ 423
G +P + ++ P V K S +++ R + +TV+G ++ P + F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*P-NGFRQNVGLHLAS---HCAHK*PTAIR 591
+ +K G PTPIQ QG P+ +SG++++ G + + L + I
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIA 169
Query: 592 RGDGPIALVLAPTRELAQQIQQVAADF 672
G+GPIALV+ P+RELA+Q V F
Sbjct: 170 AGEGPIALVICPSRELAKQTYDVVEQF 196
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 521 TGSGKTLAYILPAIV 565
TGSGKTL ++LP I+
Sbjct: 143 TGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPT 459
+ P + K S + + R + + V+G ++ P + F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 460 PIQAQGWPIAMSGKNLVA*P-NGFRQNVGLHLAS---HCAHK*PTAIRRGDGPIALVLAP 627
PIQ QG P+ ++G++++ G + + L + I G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 628 TRELAQQIQQVAADF 672
+RELA+Q +V F
Sbjct: 231 SRELARQTYEVVEQF 245
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Frame = +1
Query: 331 YRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+R ++ G + P + +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 511 A*P---NGFRQNVGLHLASHCAHK*P-TAIRRGDGPIALVLAPTRELAQQIQQVAADF 672
+G L + ++ + P + +GP A+V+APTRELAQQI++ F
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF 412
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 56.8 bits (131), Expect = 1e-08
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Frame = +1
Query: 310 SPYEVEEYRNKHEVTVSGV--EVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
S ++ + R K ++ V G V P F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 484 IAMSGKNLVA*P---NGFRQNVGLHLASHCA---HK*PTAIRRGDGPIALVLAPTRELAQ 645
A++GK+L+A +G + + + S C + P+ RR P+A+VLAPTREL
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRR--NPLAMVLAPTRELCV 200
Query: 646 QIQQVA 663
Q++ A
Sbjct: 201 QVEDQA 206
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 54.8 bits (126), Expect = 5e-08
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGP 606
V + G+ P+PIQAQ WPIAM +++VA G + +G +L H GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG-YLIPGFMHLQRIHNDSRMGP 302
Query: 607 IALVLAPTRELAQQIQQVAADF 672
LVL+PTRELA QIQ A F
Sbjct: 303 TILVLSPTRELATQIQVEALKF 324
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPTQYFEEANFPD 414
E Y KHE+TVSG +V P FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 51.6 bits (118), Expect = 5e-07
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Frame = +1
Query: 352 TVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*P-NGF 528
TV GV H T F E N + + +T+GYK+PTPIQA P+A++G++L A G
Sbjct: 158 TVDGVSFHADT--FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 529 RQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADF--WTHILC 690
+ L + + +R L+L PTRELA QI + + +T I C
Sbjct: 216 GKTAAFALPT--LERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKC 269
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 51.6 bits (118), Expect = 5e-07
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEV--HNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 492
E E + K VT GVE + + F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 493 SGKNLVA*P---NGFRQNVGLHLASHCAHK*PTAIRRGD---GPIALVLAPTRELAQQIQ 654
G++L+ +G G+ H K I G P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKK-NKKIGGGSKKVNPTCLVLSPTRELAVQIS 208
Query: 655 QV 660
V
Sbjct: 209 DV 210
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI 571
++TGSGKTLA+ +PAI+H+
Sbjct: 158 AKTGSGKTLAFGIPAIMHV 176
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 51.2 bits (117), Expect = 7e-07
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPTQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 501
R ++ + VSG + P + F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 502 NLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQ 648
A P G + K P+ DG A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 48.4 bits (110), Expect = 5e-06
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGV 432
+ PF + +P P ++ + + + SG V P F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 433 KTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASHCAHK*PTAIRRGDG-- 603
+ Y +PTP+Q PI + G++L+A G + ++R G
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSR 234
Query: 604 ---PIALVLAPTRELAQQIQQVAADF 672
P+A++L+PTRELA QI A F
Sbjct: 235 TVYPLAVILSPTRELASQIHDEAKKF 260
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 46.8 bits (106), Expect = 1e-05
Identities = 31/86 (36%), Positives = 43/86 (50%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
FE N V +K GYK PTPIQ + P+ +SG ++VA L
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIP-MLE 88
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQ 648
K + +G G AL+L+PTR+LA+Q
Sbjct: 89 KLKQHVPQG-GVRALILSPTRDLAEQ 113
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 46.0 bits (104), Expect = 2e-05
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Frame = +1
Query: 262 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKT 438
PF N DP + + E Y + + SG V P F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVA*PNG---------FRQNVGLHLASHCAHK*PTAIR 591
Y +PTP+Q PI +G++L+A F G+ H P +
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIER--PRGV- 220
Query: 592 RGDGPIALVLAPTRELAQQIQQVAADF 672
RG P+A++L+PTRELA QI A F
Sbjct: 221 RGVYPLAVILSPTRELACQIHDEARKF 247
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 439 MGYKEPTPIQAQGWPIAMSGKN-LVA*PNGFRQNVG-LHLASHCAHK*PTAIRRGDGPIA 612
MG++ PT +QAQ P+ +SG++ LV P G + + L H + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 613 LVLAPTRELAQQIQQ 657
LV+ PTREL Q+ +
Sbjct: 108 LVIVPTRELCLQVYE 122
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/98 (27%), Positives = 49/98 (50%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
FE+ + G+ G++ P+PIQ + PIA++G++++A + G A+ C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA---RAKNGTG-KTAAFCIP 188
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684
+ + A+++ PTRELA Q QV + H+
Sbjct: 189 VLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL 226
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/98 (27%), Positives = 49/98 (50%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
FE+ + G+ G++ P+PIQ + PIA++G++++A + G A+ C
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA---RAKNGTG-KTAAFCIP 188
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHI 684
+ + A+++ PTRELA Q QV + H+
Sbjct: 189 VLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL 226
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Frame = +1
Query: 349 VTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNG 525
V SG +V P F + + D + ++ Y PTP+Q PI ++ ++L+A G
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 526 FRQNVGLHLASHCAHK*PTAIRRGDG-----PIALVLAPTRELAQQIQQVAADF 672
+ + R G P A++L+PTRELA QI A F
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Frame = +1
Query: 349 VTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNG 525
V SG +V P F + + D + ++ Y PTP+Q PI ++ ++L+A G
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 526 FRQNVGLHLASHCAHK*PTAIRRGDG-----PIALVLAPTRELAQQIQQVAADF 672
+ + R G P A++L+PTRELA QI A F
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 41.5 bits (93), Expect = 5e-04
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKT 438
+P K T K EVE+ + ++ + + + N T FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSI-MTNKT--FESLSLSDNTYKSIKE 171
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHL-ASHCAHK*PTAIRRGDGPIA 612
MG+ T IQA+ P M G++++ A G + + + A ++ R G G
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTG--V 229
Query: 613 LVLAPTRELAQQIQQVAAD 669
LV+ PTRELA Q VA +
Sbjct: 230 LVICPTRELAIQSYGVAKE 248
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/109 (26%), Positives = 48/109 (44%)
Frame = +1
Query: 379 PTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLAS 558
P + F++ D V +GV GYK+P+ IQ + + G++++A + S
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 559 HCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHILCS*HVC 705
C + R+ LVL+P+RELA Q ++ H H C
Sbjct: 80 VCQIV-NISSRKVQ---VLVLSPSRELASQTEKTIQAIGAHTNIQAHAC 124
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 40.3 bits (90), Expect = 0.001
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 498
EVEE RN E E P FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAPKS-FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 499 KNLVA-*PNGFRQNVGLHL-ASHCAHK*PTAIRRGDGPIALVLAPTRELAQQI 651
K++VA G + + L + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAI 562
R++TGSGKTLAY+LP +
Sbjct: 89 RAKTGSGKTLAYLLPLL 105
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
FE+ + +G+ G+++P+PIQ + PIA++G +++A G + C
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG----AFCIP 181
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
+ A++L PTRELA Q QV +
Sbjct: 182 VLEKIDPNNNVIQAMILVPTRELALQTSQVCKE 214
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
FE+ + +G+ G+++P+PIQ + PIA++G +++A G + C
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG----AFCIP 181
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
+ A++L PTRELA Q QV +
Sbjct: 182 VLEKIDPNNNVIQAMILVPTRELALQTSQVCKE 214
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
FE+ + +G+ G+++P+PIQ + PIA++G +++A G + C
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG----AFCIP 211
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQVAAD 669
+ A++L PTRELA Q QV +
Sbjct: 212 TLEKIDPENNVIQAVILVPTRELALQTSQVCKE 244
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/118 (26%), Positives = 51/118 (43%)
Frame = +1
Query: 352 TVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFR 531
T G+E P F + + V +GV G+++P+ IQ + + G++++A
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 532 QNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTHILCS*HVC 705
+ S C T+ R AL+L+PTRELA Q ++ H H C
Sbjct: 84 GKTSMIALSVCQVV-DTSSREVQ---ALILSPTRELATQTEKTIQAIGLHANIQAHAC 137
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 38.3 bits (85), Expect = 0.005
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Frame = +1
Query: 367 EVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGL 546
E + + F E + + + + +G+K P+ IQA+ P A+ GK+++ G
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 547 H-------LASHCAHK*PTAIRRGDGP-IALVLAPTRELAQQIQQ 657
L + P RR D A VL+PTRELA QI +
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 37.5 bits (83), Expect = 0.009
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLAS-HC 564
F++ +G++ G+K T +Q P+ + GK+++A G + V L S
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 565 AHK*PTAIRRGDGP--IALVLAPTRELAQQ 648
K P A R P I LV+ PTRELA Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQP 583
+++TG+GKT+A++LP+I + P
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAP 146
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 35.9 bits (79), Expect = 0.026
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PN-GFRQNVGLHL-ASHCAHK*PTAIRRG 597
+ +K G++ T +Q PI + GK+++A G + V L A K P A R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 598 DGP--IALVLAPTRELAQQ 648
P I LV+ PTRELA Q
Sbjct: 455 RQPPIIVLVVCPTRELASQ 473
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQP 583
+++TG+GKT+A++LPAI + P
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSP 448
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 35.5 bits (78), Expect = 0.035
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Frame = +1
Query: 310 SPYEVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 489
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNPNAV-SKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 490 MSGKNLVA*PN-GFRQNVGLHLAS-HCAHK*PTAIRR----GDGPIALVLAPTRELAQQI 651
+ G +LV G + + L P +R G P LVL PTRELA
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA--- 187
Query: 652 QQVAADF 672
+QVAADF
Sbjct: 188 KQVAADF 194
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQP 583
R++TG GKTLA++LP + + N P
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGP 162
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 35.5 bits (78), Expect = 0.035
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
FE ++ + K +G ++PTP+Q P ++G++++ G Q A+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL----GLAQTGSGKTAAFALP 115
Query: 571 K*PTAIRRGDGPIALVLAPTRELAQQIQQ 657
G ALV+ PTRELA Q+ +
Sbjct: 116 ILHRLAEDPYGVFALVVTPTRELAFQLAE 144
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 35.1 bits (77), Expect = 0.046
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLAS--HCAHK*PTAIRR 594
+ +K GY+ T +Q PI + GK+++A G + V L S PT+
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 595 GDGPI-ALVLAPTRELAQQ 648
PI ALV+ PTRELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQP 583
+++TG+GKT+A++LP+I + P
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSP 120
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +1
Query: 592 RGDGPIALVLAPTRELAQQIQQ 657
RG P+ LVLAPTRELA+Q+++
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK 196
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 34.7 bits (76), Expect = 0.060
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-A*PNGFRQNVGLHL-ASHC 564
F+ + + +K MG++ T IQA + GK+++ A G + + + A
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVEL 150
Query: 565 AHK*PTAIRRGDGPIALVLAPTRELAQQIQQVAADFWTH 681
K + R G G I V+ PTRELA Q + VA + H
Sbjct: 151 LFKERFSPRNGTGVI--VICPTRELAIQTKNVAEELLKH 187
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/16 (62%), Positives = 16/16 (100%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAI 562
++TGSGKTLA+++PA+
Sbjct: 133 ARTGSGKTLAFLIPAV 148
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 34.7 bits (76), Expect = 0.060
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 610 ALVLAPTRELAQQIQQVAADFWTHILCS*HVC 705
ALVLAPTRELAQQI++V ++ H C
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 141
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.3 bits (75), Expect = 0.080
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPTQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS 495
E E N VT SG + FE+ N + +G+ M +++P+ IQA P+ M+
Sbjct: 70 EEPEDSNIKAVT-SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMT 128
Query: 496 G--KNLVA*PNGFRQNVGLHLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQV 660
K+L+A + + + PT +R P AL + PTRELA Q +V
Sbjct: 129 PPHKHLIAQAHNGSGKTTCFVLGMLSRVDPT-LRE---PQALCICPTRELANQNMEV 181
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +1
Query: 592 RGDGPIALVLAPTRELAQQIQQ 657
RG P LVLAPTRELA+Q+++
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK 208
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 33.1 bits (72), Expect = 0.18
Identities = 28/98 (28%), Positives = 47/98 (47%)
Frame = +1
Query: 367 EVHNPTQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGL 546
EVH + F+ + + +G+ G+++P+ IQ +G G +++
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 547 HLASHCAHK*PTAIRRGDGPIALVLAPTRELAQQIQQV 660
S + A+ + ALVLAPTRELAQQI++V
Sbjct: 93 -FCSGVLQQLDYALLQCQ---ALVLAPTRELAQQIEKV 126
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.7 bits (71), Expect = 0.24
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Frame = +1
Query: 403 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PN---GFRQNVGLHLASHCAHK 573
+ P +++ ++ G PIQ A+ G++++A G G+ + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 574 *P--TAIRR-GDGPIALVLAPTRELAQQIQQ 657
TA RR G P LVLAPTRELA+Q+++
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 32.7 bits (71), Expect = 0.24
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Frame = +1
Query: 472 QGWPIAMSGKNLVA*PN---GFRQNVGLHLASHCA---HK*PTAIRRGDGPIALVLAPTR 633
Q P A++GK+L+A + G + + + S C + P+ RR P+A+VLAPTR
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN--PLAMVLAPTR 59
Query: 634 ELAQQIQQVA 663
EL Q++ A
Sbjct: 60 ELCVQVEDQA 69
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1
Query: 610 ALVLAPTRELAQQIQQV 660
ALVLAPTRELAQQI++V
Sbjct: 112 ALVLAPTRELAQQIEKV 128
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 518 QTGSGKTLAYILPAIVHINNQPLFG 592
Q+GSGKTLAY++P I + + L G
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQG 443
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHI 571
+S TGSGKTLAY+LP + I
Sbjct: 153 QSYTGSGKTLAYLLPILSEI 172
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHCAH 570
F+E + V ++ + + PT IQ G P M K++V + +L
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL 173
Query: 571 K*PTAIRRGDG-----PIALVLAPTRELAQQIQQVAADFWTH 681
G P +VL PTREL++Q+ +VA H
Sbjct: 174 MREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHH 215
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAI 562
S TGSGKTLAY+LP +
Sbjct: 156 SHTGSGKTLAYLLPIV 171
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 200 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 84
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 488 LCLERI*WRSQTGSGKTLAYILPAIVHINNQ 580
LC I ++TGSGKTLA+++P + ++ +
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPL 586
S TGSGKTL+Y LP + + ++P+
Sbjct: 69 SPTGSGKTLSYALPIVQLLASRPV 92
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPLFGEVMVR 607
++TGSGKT Y+ P I + N L EV R
Sbjct: 124 AETGSGKTHGYLAPIIDQLTNTALDSEVTNR 154
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 650 ICCANSLVGAKTKAIGPSPLRI 585
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 227
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASHC 564
+K P P+ ++ + + + P G+R+NVG+ L S C
Sbjct: 30 LKQFSVSSPKPLVVLSVALSSPARTVESPPVGYRKNVGICLVSPC 74
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 81 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 227
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQ 580
+QTGSGKTL Y+L IN Q
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ 141
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/17 (52%), Positives = 17/17 (100%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAI 562
+++TG+GK++A++LPAI
Sbjct: 418 KAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/17 (52%), Positives = 17/17 (100%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAI 562
+++TG+GK++A++LPAI
Sbjct: 371 KAKTGTGKSMAFLLPAI 387
>At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 155
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 275 FLLKGWSKQNPNLGV----ACSALQRILFSHQSLQILQIYCHRC 156
FLL+ SK NPNL V S L I+ L + +++ +RC
Sbjct: 33 FLLRLTSKSNPNLPVDDVSIASGLANIIVLADQLSLNRLFSYRC 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,865,431
Number of Sequences: 28952
Number of extensions: 320574
Number of successful extensions: 1025
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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