Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20983
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 43 4e-05
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 42 1e-04
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.3
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 2.9
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 3.8
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 5.0
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 5.0
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 8.8
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 25 8.8
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/80 (26%), Positives = 45/80 (56%)
Frame = +3
Query: 258 YLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVL 437
+ G + + ++ + + + + +LK+ + + RT+LV +R TLAD+ S L F ++
Sbjct: 120 FRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNSII 179
Query: 438 DPSVRSSLINVQRWFLTVAH 497
D R L ++ R+++T+ H
Sbjct: 180 DEKTRKELPHLTRYYITMFH 199
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 43 SEDFLKKFPAGKVPAFESADGKVLLTESNAIAYY 144
S D KFP K+P F ADG L+E AI Y
Sbjct: 40 SADLAAKFPLQKLPVFIGADG-FELSEVIAIVKY 72
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 41.5 bits (93), Expect = 1e-04
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Frame = +1
Query: 37 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 204
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 205 ASWSDSEL 228
S+++SEL
Sbjct: 97 CSFTNSEL 104
Score = 38.7 bits (86), Expect = 9e-04
Identities = 19/74 (25%), Positives = 38/74 (51%)
Frame = +3
Query: 276 FNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRS 455
+++Q + A++ + D L ++T+LV R+TLAD+ L +VL S +
Sbjct: 121 YDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLA 180
Query: 456 SLINVQRWFLTVAH 497
++ R++ T+ H
Sbjct: 181 KYTHIYRYYQTIYH 194
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 310 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 402
TY PP Y D+FS APS+ + S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 719 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYL 612
RRGPWTP ++ + +L +++ L +H L
Sbjct: 324 RRGPWTPKLVESSGGYEEHELKEIAYIMLHYHNKPL 359
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 437 RPERP--FVADKRSALVPDRRPPATSSAVVGSLTLCAAPPTYDPKK 568
+P +P VA + L+P R ++S +LT PPT P+K
Sbjct: 1005 KPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPPRK 1050
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 113 STFPSALSNAGTFPAGNFFKKSSDL 39
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 124 SNAIAYYVANESLRGGDLATQARVWQWAS 210
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 176 WLPKPVSGSGHHGLTVNYCLLPV 244
+LP +SG G+ L+V Y +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 79 VPAFESADGKVLLTESNA-IAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVF 255
+P + A G V T + A + A S+ G+L T ++ +W++ +L + +
Sbjct: 390 LPKWTLALGAVTTTLAQAALVKQAAGVSVFVGNLGTGSQ-----TWAELGILESQVTGQY 444
Query: 256 LTLVSCNSTN 285
L +SC STN
Sbjct: 445 LAQISCTSTN 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,032
Number of Sequences: 5004
Number of extensions: 60047
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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