Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20983
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 62 6e-10
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 56 2e-08
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 44 1e-04
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 44 1e-04
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 40 0.003
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 36 0.046
02_05_1202 + 34932291-34933027,34933297-34933774 35 0.061
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 35 0.080
03_01_0249 - 1935355-1935827,1936129-1936330 34 0.14
10_06_0036 - 9914606-9915561,9916287-9916368 33 0.32
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709 31 1.3
09_04_0182 + 15376025-15376498 30 1.7
03_02_0620 + 9916684-9917336,9919219-9919492,9920502-9920585,992... 30 2.3
02_04_0633 - 24616563-24617279 30 2.3
01_01_0735 + 5730783-5733320 29 4.0
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 5.3
08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766 29 5.3
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 29 5.3
03_03_0142 + 14800317-14801240 29 5.3
01_04_0027 + 15216424-15216672 29 5.3
08_01_0148 + 1172975-1173340 28 9.2
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 VKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVA----NESLRG 168
V++ NF G +NK+ +FLK P GK+P E+ +G V ESNAIA YVA N SL G
Sbjct: 52 VELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVF--ESNAIARYVARLKDNSSLCG 109
Query: 169 GDLATQARVWQWASWSDSELLPASCAWVF 255
L + + QW +S +E+ W++
Sbjct: 110 SSLIDYSHIEQWMDFSATEVDANIGRWLY 138
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/81 (32%), Positives = 43/81 (53%)
Frame = +3
Query: 255 PYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHV 434
P LG + E A + L +L L+ HL + T+LV +TLAD+++ L + F +
Sbjct: 139 PRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRI 198
Query: 435 LDPSVRSSLINVQRWFLTVAH 497
L S S +V+R+F T+ +
Sbjct: 199 LIKSFTSEFPHVERYFWTMVN 219
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 56.4 bits (130), Expect = 2e-08
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Frame = +1
Query: 1 VKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANES------- 159
V++A NF G +NK+ ++LK P GKVP E+ DG V ESNAIA YV + S
Sbjct: 589 VELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVF--ESNAIARYVLSSSHFPEVTR 646
Query: 160 ------LRGGDLATQARVWQWASWSDSELLPASCAWVF 255
L G L A + QW +S +E+ + W+F
Sbjct: 647 SKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLF 684
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Frame = +1
Query: 1 VKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV----------- 147
V++ NF G +NK+ +FLK P GK+P E+ DG V ESNAIA YV
Sbjct: 28 VELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVF--ESNAIARYVLSHCHFPEVTR 85
Query: 148 --ANESLRGGDLATQARVWQWASWSDSELLPASCAWVF 255
A+ L G L A + QW +S +E+ W++
Sbjct: 86 SKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLY 123
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +3
Query: 255 PYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHV 434
P LGI + + E A + L +L L+ HL + T+LV +TLAD+++ L F +
Sbjct: 124 PRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARI 183
Query: 435 LDPSVRSSLINVQRWFLTVAH 497
+ S S +V+R+F T+ +
Sbjct: 184 MTKSFTSEFPHVERYFWTMVN 204
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/81 (29%), Positives = 43/81 (53%)
Frame = +3
Query: 255 PYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHV 434
P LG + + E A + L +L L+ HL + T+LV +TLAD+++ L F +
Sbjct: 685 PRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARI 744
Query: 435 LDPSVRSSLINVQRWFLTVAH 497
+ + S +V+R+F T+ +
Sbjct: 745 MTKNFTSEFPHVERYFWTMVN 765
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 7 VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN-----ESLRGG 171
VA + GE N+S L + P GK+PAFE DG+V L ES AI YV + LR G
Sbjct: 31 VAVDMAAGE-NRSRHHLARSPFGKIPAFE--DGEVTLFESRAIQRYVLRNYNKPDLLREG 87
Query: 172 DLATQARVWQW 204
+L A V W
Sbjct: 88 NLEESAMVDMW 98
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 306 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFL 485
S+ AA LDG+L +RTFLV+ +++AD++V+S L Q N+ RWF
Sbjct: 93 SEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFN 152
Query: 486 TVA 494
++A
Sbjct: 153 SIA 155
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 306 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWF 482
S+ A +DG+L++RTFLV +T+AD+ V+S L Q N+ RWF
Sbjct: 91 SEFEVACSFVDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRWESLRKSKKYQNLVRWF 149
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 35.5 bits (78), Expect = 0.046
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Frame = +1
Query: 25 FGET-NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANES--------LRGGDL 177
FG+ +K D L + P G+VPAF+ DG ++L ES AI Y+ + LR GD
Sbjct: 36 FGDREHKGPDHLARNPFGQVPAFQ--DGDLMLFESRAICRYILRKHRATDEANLLREGDP 93
Query: 178 ATQARVWQW 204
+ A V W
Sbjct: 94 SESAVVDAW 102
>02_05_1202 + 34932291-34933027,34933297-34933774
Length = 404
Score = 35.1 bits (77), Expect = 0.061
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 279 NKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLL 416
+++ + A +L AAL L+ HL +L + +TLADV +F+TL+
Sbjct: 252 SQEAYDAAAGELFAALDRLEDHLSGSRYLCGDTLTLADVCLFTTLV 297
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 34.7 bits (76), Expect = 0.080
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 37 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV----ANESLRGGDLATQARVWQW 204
+K + + P G+VPAFE DG + L ES AI+ Y+ ++ LR +L+ A V W
Sbjct: 41 HKRPPHISRNPFGQVPAFE--DGDLTLFESRAISKYILRKHGSDLLRESNLSESAMVDVW 98
Query: 205 ASWSDSELLPASCAWVF 255
S A +F
Sbjct: 99 LEVESSHFDGAMSPIIF 115
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 37 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQAR 192
+KS FLK P G+VPAF+ D + ES AI Y+ ++ G+ R
Sbjct: 42 HKSPSFLKLQPFGQVPAFK--DSLTTVFESRAICRYICDQYADSGNKTLMGR 91
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 425 PARARPERPFVADKRSALVPDRRPPATS-SAVVGSLTLCAAPPT 553
PA A P P V A P PAT A G + C+APPT
Sbjct: 195 PAAAPPSTPVVVVPAPATSPPMSMPATPPEAAAGGMAPCSAPPT 238
>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
Length = 191
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 294 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV--FSTLLHAF-QHV 434
E AK++LL L+ L+G L R+F + D+++ FS++ H + QH+
Sbjct: 110 EMAKAELLDQLRRLEGVLGDRSFFSGDEFGFLDIVLIPFSSMFHGYKQHM 159
>09_04_0182 + 15376025-15376498
Length = 157
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 552 VGGAAQSVSEPTTAELVAGGRRSGTNAERLSATNGRSGL 436
VGGA+ S + +GG R+G++A + ++G SGL
Sbjct: 101 VGGASSSAGSSAGSSAGSGGSRTGSSAGSSAGSSGGSGL 139
>03_02_0620 +
9916684-9917336,9919219-9919492,9920502-9920585,
9921295-9921356,9921699-9921762
Length = 378
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -1
Query: 570 YFLGSYVGGAAQSVSEPTTAELVAGGRRSGTNAERLSATNG----RSGLARAGKHA 415
+ +G + G A SVS+ T+A + AGG S L AT G RS LA+A A
Sbjct: 34 FVMGFFTGFAPSSVSDWTSAAVSAGGVGSSHVVRSLHATGGAAVNRSLLAQAAAGA 89
>02_04_0633 - 24616563-24617279
Length = 238
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 128 MPSLTTLPMKVSAEEIWLPKPVSGSGHHGLTVNYC 232
MP+ TT+ M+ S + W P+ G HG VN+C
Sbjct: 1 MPAATTIQMEASPADHWSPRHRRRCGCHG--VNWC 33
>01_01_0735 + 5730783-5733320
Length = 845
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 12 TEFRIWRDQQVRRLLEEVSCRKSACIRKCRWKSA 113
T F +W D + + +E SC+K C+ C K+A
Sbjct: 372 TYFHLWGDSRGAPMTDEESCKKD-CLSNCSCKAA 404
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 349 SHAPSLLPRESHLPMSLSS 405
+H PSL+P ESHL S+SS
Sbjct: 498 NHQPSLVPNESHLNNSVSS 516
>08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766
Length = 310
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -2
Query: 728 ASSRRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 570
A ++GPWTP QE P +W A+ +T + C SC + + L PG
Sbjct: 10 AEVKKGPWTPEEDLMLVAYVQEH-GPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPG 64
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 52 FLKKFPAGKVPAFESADGK 108
FLK P GKVP F DGK
Sbjct: 49 FLKISPEGKVPVFNGGDGK 67
>03_03_0142 + 14800317-14801240
Length = 307
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -2
Query: 719 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 570
++GPWTP QE P +W A+ T L C SC + + L PG
Sbjct: 13 KKGPWTPEEDMVLASYVQEH-GPGNWRAVPPRTGLLRCSKSCRLRWTNYLRPG 64
>01_04_0027 + 15216424-15216672
Length = 82
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 237 FLCLGLPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADV 395
F C+ P L + N++ V+ L L+V + HL T+L E ++ A++
Sbjct: 22 FQCIINPALHGIPTNQKIVDETVEKLKKVLEVYEAHLSENTYLAGEFVSFANI 74
>08_01_0148 + 1172975-1173340
Length = 121
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 458 ADKRSALVP-DRRPPATSSAVVGSLTLCAAPPTYDPK 565
A+ R+ V RR P T+S + S L APP+ +PK
Sbjct: 23 ANTRATFVSFPRRSPPTTSLLSASSALAPAPPSANPK 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,326,805
Number of Sequences: 37544
Number of extensions: 494733
Number of successful extensions: 1689
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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