BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20983 (756 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07) 50 2e-06 SB_21666| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3 SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055) 29 3.1 SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) 29 3.1 SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14) 29 5.4 SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017) 28 7.1 SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45) 28 9.4 SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 28 9.4 >SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07) Length = 203 Score = 50.4 bits (115), Expect = 2e-06 Identities = 33/83 (39%), Positives = 42/83 (50%) Frame = +1 Query: 13 PNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQAR 192 P F FG+ N + +FLKKFP GKVPAFE+ AN R L T Sbjct: 32 PAFTFGKDNHTAEFLKKFPLGKVPAFETK---------------TANACTRAMPLLT--- 73 Query: 193 VWQWASWSDSELLPASCAWVFLT 261 + +++D ELLPA+ WVF T Sbjct: 74 --TYVNFADQELLPAAATWVFPT 94 Score = 49.6 bits (113), Expect = 3e-06 Identities = 23/53 (43%), Positives = 36/53 (67%) Frame = +3 Query: 255 PYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 413 P G+MQ++KQ+ ++A D+ + +L+ LL +TFLV ER+TLAD+ V L Sbjct: 93 PTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145 >SB_21666| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 469 Score = 30.7 bits (66), Expect = 1.3 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = +2 Query: 182 PKPVSGSGHHGLTVNYC-LLPVLGSSLPWYHAIQQT 286 PKP H LT+ YC ++ SLPW+ A T Sbjct: 44 PKPQFDISRHDLTLGYCVIIRAKSVSLPWFRAHSAT 79 >SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 351 Score = 29.5 bits (63), Expect = 3.1 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +1 Query: 172 DLATQARVWQWASWSDSELLPASCA-WVFLTLVSCNSTNRMLN 297 DL T A+V+ WA W ++ SCA V + +C S ++ N Sbjct: 78 DLTTTAQVYSWAMWEPWQMRNLSCAQGVKTRMRNCTSLSQNHN 120 >SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055) Length = 141 Score = 29.5 bits (63), Expect = 3.1 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +1 Query: 172 DLATQARVWQWASWSDSELLPASCA-WVFLTLVSCNSTNRMLN 297 DL T A+V+ WA W ++ SCA V + +C S ++ N Sbjct: 78 DLTTTAQVYSWAMWEPWQMRNLSCAQGVKTRMRNCTSLSQNHN 120 >SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) Length = 260 Score = 29.5 bits (63), Expect = 3.1 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +3 Query: 285 QNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSS 458 ++VE AK +D+ L ++ HL R FLV + +T+AD V +T + L R Sbjct: 112 RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSV-ATSIAVILTSLGDEDRKP 170 Query: 459 LINVQRWF 482 N+ W+ Sbjct: 171 YQNIVSWY 178 >SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14) Length = 505 Score = 28.7 bits (61), Expect = 5.4 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = +1 Query: 4 KVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESL 162 K+ P V GE N + +KK +P GK + + + I + N+SL Sbjct: 123 KLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRSIIVNDIENDSL 175 >SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017) Length = 1675 Score = 28.3 bits (60), Expect = 7.1 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 353 THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 484 T P +R +HT L+ +PA+ RP+ P A K+ A VP Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627 >SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45) Length = 554 Score = 27.9 bits (59), Expect = 9.4 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +3 Query: 267 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 401 +M + K +VE K DL L+ + LLTR FL+ + + D+I+ Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237 >SB_32980| Best HMM Match : DEAD (HMM E-Value=0) Length = 985 Score = 27.9 bits (59), Expect = 9.4 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%) Frame = +2 Query: 344 SSHTHLPC--YRENHTCRCHCLQYT 412 S +T PC Y+ TC C C+ YT Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,413,300 Number of Sequences: 59808 Number of extensions: 528506 Number of successful extensions: 1428 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1307 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1427 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2058295707 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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