Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20983
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 50   2e-06
SB_21666| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  29   3.1  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 29   3.1  
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    29   5.4  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    28   7.1  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   9.4  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   9.4  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 33/83 (39%), Positives = 42/83 (50%)
 Frame = +1

Query: 13  PNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGDLATQAR 192
           P F FG+ N + +FLKKFP GKVPAFE+                 AN   R   L T   
Sbjct: 32  PAFTFGKDNHTAEFLKKFPLGKVPAFETK---------------TANACTRAMPLLT--- 73

Query: 193 VWQWASWSDSELLPASCAWVFLT 261
              + +++D ELLPA+  WVF T
Sbjct: 74  --TYVNFADQELLPAAATWVFPT 94



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = +3

Query: 255 PYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 413
           P  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+TLAD+ V   L
Sbjct: 93  PTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145


>SB_21666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 182 PKPVSGSGHHGLTVNYC-LLPVLGSSLPWYHAIQQT 286
           PKP      H LT+ YC ++     SLPW+ A   T
Sbjct: 44  PKPQFDISRHDLTLGYCVIIRAKSVSLPWFRAHSAT 79


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 172 DLATQARVWQWASWSDSELLPASCA-WVFLTLVSCNSTNRMLN 297
           DL T A+V+ WA W   ++   SCA  V   + +C S ++  N
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCAQGVKTRMRNCTSLSQNHN 120


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 172 DLATQARVWQWASWSDSELLPASCA-WVFLTLVSCNSTNRMLN 297
           DL T A+V+ WA W   ++   SCA  V   + +C S ++  N
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCAQGVKTRMRNCTSLSQNHN 120


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 285 QNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSS 458
           ++VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +T +      L    R  
Sbjct: 112 RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSV-ATSIAVILTSLGDEDRKP 170

Query: 459 LINVQRWF 482
             N+  W+
Sbjct: 171 YQNIVSWY 178


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 4   KVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESL 162
           K+ P  V GE N   + +KK     +P      GK +  + + I   + N+SL
Sbjct: 123 KLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRSIIVNDIENDSL 175


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 353  THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 484
            T  P +R +HT     L+     +PA+ RP+ P  A    K+ A VP
Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 267 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 401
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +2

Query: 344 SSHTHLPC--YRENHTCRCHCLQYT 412
           S +T  PC  Y+   TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,413,300
Number of Sequences: 59808
Number of extensions: 528506
Number of successful extensions: 1428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)