Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20983
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 386 KCDSLGNKEGACEKMSVQYF*GGQ*VRLC 300
           KC++L      C + SV Y  G    +LC
Sbjct: 354 KCNTLERTPSKCSQTSVHYSNGQTHSQLC 382


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 626 HTSYLFCPPSCSVHQLTP 573
           HT+  FC P C  + + P
Sbjct: 39  HTTNAFCLPFCGPNVINP 56


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 626 HTSYLFCPPSCSVHQLTP 573
           HT+  FC P C  + + P
Sbjct: 38  HTTNAFCLPFCGPNVINP 55


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 482 PDRRPPATSSAVVGSLTLCAAPPTYD 559
           PD+  PA+SSA     ++C++P + D
Sbjct: 589 PDK--PASSSASSAPTSVCSSPRSED 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,809
Number of Sequences: 438
Number of extensions: 4864
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)