Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20983
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 61 7e-10
At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ... 60 2e-09
At1g02930.1 68414.m00260 glutathione S-transferase, putative sim... 42 4e-04
At4g02520.1 68417.m00345 glutathione S-transferase, putative 39 0.003
At2g02930.1 68415.m00241 glutathione S-transferase, putative 39 0.003
At1g02950.2 68414.m00263 glutathione S-transferase, putative sim... 38 0.005
At1g02950.1 68414.m00262 glutathione S-transferase, putative sim... 38 0.005
At1g02920.1 68414.m00259 glutathione S-transferase, putative sim... 38 0.007
At5g44000.1 68418.m05384 glutathione S-transferase C-terminal do... 36 0.022
At1g02940.1 68414.m00261 glutathione S-transferase, putative sim... 34 0.089
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF... 33 0.15
At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta id... 32 0.47
At3g25670.1 68416.m03195 leucine-rich repeat family protein cont... 29 2.5
At3g14120.2 68416.m01786 expressed protein similar to Nuclear po... 29 2.5
At3g14120.1 68416.m01785 expressed protein similar to Nuclear po... 29 2.5
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-... 29 2.5
At1g13230.1 68414.m01535 leucine-rich repeat family protein cont... 29 3.3
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 29 4.4
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 4.4
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon... 29 4.4
At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative / gluta... 28 7.7
At3g28910.1 68416.m03608 myb family transcription factor (MYB30)... 28 7.7
At2g02390.3 68415.m00179 glutathione S-transferase zeta 1 (GSTZ1... 28 7.7
At1g68780.1 68414.m07862 leucine-rich repeat family protein cont... 28 7.7
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 61.3 bits (142), Expect = 7e-10
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +1
Query: 1 VKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVA----NESLRG 168
+ V +F G TNK+ FLK P GKVP E+ +G V ESNAIA YV+ + SL G
Sbjct: 28 IDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGSVF--ESNAIARYVSRLNGDNSLNG 85
Query: 169 GDLATQARVWQWASWSDSELLPASCAW 249
L A++ QW +S E+ + W
Sbjct: 86 SSLIEYAQIEQWIDFSSLEIYASILRW 112
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/81 (37%), Positives = 42/81 (51%)
Frame = +3
Query: 255 PYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHV 434
P +G M ++ E A S L AL L+ HL + T+LV ITLAD+I L F V
Sbjct: 115 PRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATV 174
Query: 435 LDPSVRSSLINVQRWFLTVAH 497
+ S +V+R+F TV +
Sbjct: 175 MTKKFTSEFPHVERYFWTVVN 195
>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative similar to elongation factor 1B
gamma GI:3868758 from [Oryza sativa]
Length = 413
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +1
Query: 1 VKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVA----NESLRG 168
++ + +F G TNKS +FLK P GKVP E+ +G + ESNAIA YV+ + SL G
Sbjct: 28 IEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGPIF--ESNAIARYVSRKNGDNSLNG 85
Query: 169 GDLATQARVWQWASWSDSELLPASCAW 249
L A + QW +S E+ W
Sbjct: 86 SSLIEYAHIEQWIDFSSLEIDANMLKW 112
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/81 (33%), Positives = 42/81 (51%)
Frame = +3
Query: 255 PYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHV 434
P +G F+ E A S L L+ L+ HL + TFLV +TLAD++ L F V
Sbjct: 115 PRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATV 174
Query: 435 LDPSVRSSLINVQRWFLTVAH 497
+ S+ +V+R+F T+ +
Sbjct: 175 MTKKFTSAFPHVERYFWTMVN 195
>At1g02930.1 68414.m00260 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]
Length = 208
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 37 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANE-SLRGGDLATQAR 192
+K E F+ + P GKVPAFE D K+ ES AI Y+A+E S +G +L + +
Sbjct: 41 HKKEPFILRNPFGKVPAFEDGDFKIF--ESRAITQYIAHEFSDKGNNLLSTGK 91
>At4g02520.1 68417.m00345 glutathione S-transferase, putative
Length = 212
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +1
Query: 37 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 153
+K E FL + P G+VPAFE DG + L ES AI Y+A+
Sbjct: 41 HKKEPFLSRNPFGQVPAFE--DGDLKLFESRAITQYIAH 77
>At2g02930.1 68415.m00241 glutathione S-transferase, putative
Length = 212
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +1
Query: 37 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 153
+K E FL + P G+VPAFE DG + L ES AI Y+A+
Sbjct: 41 HKKEPFLSRNPFGQVPAFE--DGDLKLFESRAITQYIAH 77
>At1g02950.2 68414.m00263 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 245
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 37 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN-ESLRGGDL 177
+K+E FL P G+VP FE DG V L ES AI Y+A S RG L
Sbjct: 64 HKTEPFLSLNPFGQVPVFE--DGSVKLYESRAITQYIAYVHSSRGTQL 109
>At1g02950.1 68414.m00262 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 243
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 37 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN-ESLRGGDL 177
+K+E FL P G+VP FE DG V L ES AI Y+A S RG L
Sbjct: 62 HKTEPFLSLNPFGQVPVFE--DGSVKLYESRAITQYIAYVHSSRGTQL 107
>At1g02920.1 68414.m00259 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]; supported by cDNA GI:443697.
Length = 209
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 37 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 153
+K E F+ + P GKVPAFE DG L ES AI Y+A+
Sbjct: 41 HKKEPFIFRNPFGKVPAFE--DGDFKLFESRAITQYIAH 77
>At5g44000.1 68418.m05384 glutathione S-transferase C-terminal
domain-containing protein contains Pfam domain PF00043:
Glutathione S-transferase, C-terminal domain
Length = 399
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = +3
Query: 279 NKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLL 416
+++ + A ++L + L ++ HL + +L ER+TLADV +F+TL+
Sbjct: 261 SQEAYDGAVNELFSTLDEIEDHLGSNRYLCGERLTLADVCLFTTLI 306
>At1g02940.1 68414.m00261 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]
Length = 256
Score = 34.3 bits (75), Expect = 0.089
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 7 VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVA 150
+ N + G+ K FL P G+VP F DG + LTES AI+ Y+A
Sbjct: 67 ITVNLIAGD-QKKPSFLAINPFGQVPVF--LDGGLKLTESRAISEYIA 111
>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
EF-1-beta, putative nearly identical to eEF-1beta
[Arabidopsis thaliana] GI:398606
Length = 231
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 318 AALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWF 482
+ LK LD HLLTR+++ + + D+ VF+ L S +NV RWF
Sbjct: 11 SGLKKLDEHLLTRSYITGYQASKDDITVFT--------ALSKPPTSEFVNVSRWF 57
>At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta
identical to SP|P48006 Elongation factor 1-beta
(EF-1-beta) {Arabidopsis thaliana}
Length = 231
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 318 AALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWF 482
A LK LD HLLTR+++ + + D+ VF+ L P+ S +N RW+
Sbjct: 11 AGLKKLDEHLLTRSYITGYQASKDDITVFAAL------AKPPT--SQYVNASRWY 57
>At3g25670.1 68416.m03195 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; +
Length = 475
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 208 SWSDSELLPASCAWVFLTLVSCNSTNRMLNVQSLT 312
SW+ S+L P C W + VSC+ + V LT
Sbjct: 52 SWNGSDLYPDPCGWTPIQGVSCDLYGDLWYVTDLT 86
>At3g14120.2 68416.m01786 expressed protein similar to Nuclear pore
complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
norvegicus]
Length = 1077
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +1
Query: 184 QARVWQWASWSDSELLPASCAW---VFLTLVSCNSTNRMLNV---QSLTYWPP*KYWTDI 345
Q R+W+WAS+ SE + V + C++ NRML + W K W D+
Sbjct: 387 QLRLWKWASYCASEKIAEQDGGKHEVAVFATQCSNLNRMLPICTDWESACWAMAKSWLDV 446
>At3g14120.1 68416.m01785 expressed protein similar to Nuclear pore
complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
norvegicus]
Length = 1101
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +1
Query: 184 QARVWQWASWSDSELLPASCAW---VFLTLVSCNSTNRMLNV---QSLTYWPP*KYWTDI 345
Q R+W+WAS+ SE + V + C++ NRML + W K W D+
Sbjct: 387 QLRLWKWASYCASEKIAEQDGGKHEVAVFATQCSNLNRMLPICTDWESACWAMAKSWLDV 446
>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
domain-containing protein-related contains weak hit to
Pfam F00627: UBA/TS-N domain; supported by tandem
duplication of ubiquitin-associated (UBA)/TS-N domain
protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
thaliana]
Length = 508
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 262 LVSCNSTNRMLNVQSLTYWPP*KYWTDIFSHAPSLLPRES 381
L++ + N N +S + WPP K W D H + E+
Sbjct: 195 LMASSQVNTQENQESTSVWPPMKTWVDRICHETKVSREEA 234
>At1g13230.1 68414.m01535 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to gb|U42445
Cf-2.2 from Lycopersicon pimpinellifolium
Length = 424
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 208 SWSDSELLPASCAWVFLTLVSCNSTNRMLNVQSLT 312
SW+ S L P C W + VSC+ N + V L+
Sbjct: 55 SWNGSALYPDPCGWTPIQGVSCDIYNDLWYVTDLS 89
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = +1
Query: 295 NVQSLTYWPP*-------KYWTDIFSHAPSLLPRESHLPMSLSSVHCCML 423
NV S+T PP ++ F PS L RE LPMSL CML
Sbjct: 344 NVPSVTVGPPGSIPCPLCRHGITAFKRLPSSLTREMKLPMSLGFCAPCML 393
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 482 PDRRPPATSSAVVGSLTLCAAPPTYDPKKYQELAGAQN 595
P P TSS + ++T AP T DPK+ G +
Sbjct: 2009 PVSTAPTTSSTLASAITSSGAPETEDPKRAPSPGGGSS 2046
>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to acyl
CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
Length = 665
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 466 FISDERTLGSSTCWKACSSVLKTMTSASVILSVTRKVRVRRCPS 335
F+ ++ +C K CSS LKT+ S + S ++ +C S
Sbjct: 156 FVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQKEEAKNQCVS 199
>At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative /
glutamyl-tRNA synthetase, putatuve / GluRS, putative
identical to gi:3435196
Length = 719
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 333 LDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTV 491
+D +L + TFLV +++ADV ++S L Q ++ RWF ++
Sbjct: 104 VDKYLESSTFLVGHSLSIADVAIWSALAGTGQRWESLRKSKKYQSLVRWFNSI 156
>At3g28910.1 68416.m03608 myb family transcription factor (MYB30)
identical to myb-like protein GB:AJ007289 [Arabidopsis
thaliana] (Plant J. 20 (1), 57-66 (1999))
Length = 323
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -2
Query: 719 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 570
++GPWTP QE P +W A+ +T L C SC + + L PG
Sbjct: 13 KKGPWTPEEDIILVTYIQEH-GPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG 64
>At2g02390.3 68415.m00179 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 228
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 46 EDFLKKFPAGKVPAFESADGKVLLTESNAIAYYV 147
+DF K P G VPA DG V++ +S AI Y+
Sbjct: 56 QDFKKINPMGTVPAL--VDGDVVINDSFAIIMYL 87
>At1g68780.1 68414.m07862 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 432
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 208 SWSDSELLPASCAWVFLTLVSCNSTNRMLNVQSLTY 315
SW+ S L P C W + V+C+ + + V +L++
Sbjct: 57 SWNGSYLYPDPCGWTPIQGVTCDIYDELWYVTALSF 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,910
Number of Sequences: 28952
Number of extensions: 356309
Number of successful extensions: 1010
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -