SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20982
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    29   0.87 
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    28   1.5  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.5  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    26   4.6  
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.6  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   6.1  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    26   6.1  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   6.1  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    25   8.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.1  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   8.1  

>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  MSANNVKPFTVFVEGNIGSGKTTFLE 136
           M+    KP  + V G  GSGKTTF++
Sbjct: 1   MTDKEKKPCAIIVVGMAGSGKTTFMQ 26


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 53  SKMSANNVKPFTVFVEGNIGSGKTTFLEHFRQ 148
           SK  +  ++P  V + G++  GKTT L+ FR+
Sbjct: 162 SKKDSGPLRPPVVTLMGHVDHGKTTLLDAFRK 193


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 422 HSSSTANCAGWSVLFLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETY 264
           H   +A   GWS++ +  C  + Y +L   R +     G    C+S  +  TY
Sbjct: 109 HYYLSAMIIGWSLVTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLYISMTY 161


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/47 (23%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +3

Query: 462 FDSISKDITFNSV--PKEKKRARSEEQCVPLSYIEELHRLHEDWLIN 596
           F++++ D+   SV   KEK   + +++C+   +++++ +L  + L+N
Sbjct: 501 FETLNNDVDDESVIGEKEKLILKQKQKCLSEFFVDDIKKLLNEELLN 547


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 189 GEILKVAIFWNSCTKIQKNG 248
           G ++   I W SC KI+K G
Sbjct: 148 GRLIDTGILWESCEKIEKLG 167


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +1

Query: 316 VKLMERSLFSARYCFVEHIMRNNTLHPAQFAVLDEWFRFIQHNIPIDADLIVYLKTSPSI 495
           ++  ERS+       VE + RN  + P       E      HN P+     + +KTS S 
Sbjct: 605 IEPFERSVDPNNADIVEMVERNGIVVPKVTVTSHEDDVDSVHNTPMSVSSTLSVKTSSSK 664

Query: 496 VYQRKKRELVQKS 534
           V + K++    KS
Sbjct: 665 VPRNKRKRRKGKS 677


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 71  NVKPFTVFVEGNIGSGKTTFLE-HFR-QFEDITLLTEPVEM 187
           NV  F + + G+ G+GKTTF++ H   +FE   + T  VE+
Sbjct: 6   NVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEV 46


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 205 LQSFGTHVQRSRKMGDEFQSYVSLTMLDM 291
           L SF +  +R R+   EF +  SLT LDM
Sbjct: 280 LSSFRSSFERDRRRQQEFLAPKSLTTLDM 308


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 217 QKIATFKISPHFNGLRQQSD 158
           +KI+ FK+ P F+ L+ +SD
Sbjct: 294 EKISPFKLEPQFHHLKDKSD 313


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 195 SRHISTGSVNKVISSN 148
           S+H+ST S+N+V SSN
Sbjct: 656 SKHLSTSSLNRVNSSN 671


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 47  NISKMSANNVKPFTVFVEGNIGSGKTTFLE 136
           N S+ S     P T+ V G  GSGKTT +E
Sbjct: 17  NRSRESIQFFSPLTLIV-GQNGSGKTTIIE 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,021
Number of Sequences: 5004
Number of extensions: 62236
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -