BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20982 (710 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 29 0.87 SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.5 SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 27 3.5 SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 26 4.6 SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.6 SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 6.1 SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 26 6.1 SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 26 6.1 SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc... 25 8.1 SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 8.1 SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 8.1 >SPBC119.15 |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 367 Score = 28.7 bits (61), Expect = 0.87 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +2 Query: 59 MSANNVKPFTVFVEGNIGSGKTTFLE 136 M+ KP + V G GSGKTTF++ Sbjct: 1 MTDKEKKPCAIIVVGMAGSGKTTFMQ 26 >SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual Length = 686 Score = 27.9 bits (59), Expect = 1.5 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +2 Query: 53 SKMSANNVKPFTVFVEGNIGSGKTTFLEHFRQ 148 SK + ++P V + G++ GKTT L+ FR+ Sbjct: 162 SKKDSGPLRPPVVTLMGHVDHGKTTLLDAFRK 193 >SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 482 Score = 26.6 bits (56), Expect = 3.5 Identities = 14/53 (26%), Positives = 23/53 (43%) Frame = -1 Query: 422 HSSSTANCAGWSVLFLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETY 264 H +A GWS++ + C + Y +L R + G C+S + TY Sbjct: 109 HYYLSAMIIGWSLVTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLYISMTY 161 >SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosaccharomyces pombe|chr 1|||Manual Length = 618 Score = 26.2 bits (55), Expect = 4.6 Identities = 11/47 (23%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Frame = +3 Query: 462 FDSISKDITFNSV--PKEKKRARSEEQCVPLSYIEELHRLHEDWLIN 596 F++++ D+ SV KEK + +++C+ +++++ +L + L+N Sbjct: 501 FETLNNDVDDESVIGEKEKLILKQKQKCLSEFFVDDIKKLLNEELLN 547 >SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 336 Score = 26.2 bits (55), Expect = 4.6 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +3 Query: 189 GEILKVAIFWNSCTKIQKNG 248 G ++ I W SC KI+K G Sbjct: 148 GRLIDTGILWESCEKIEKLG 167 >SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 679 Score = 25.8 bits (54), Expect = 6.1 Identities = 20/73 (27%), Positives = 31/73 (42%) Frame = +1 Query: 316 VKLMERSLFSARYCFVEHIMRNNTLHPAQFAVLDEWFRFIQHNIPIDADLIVYLKTSPSI 495 ++ ERS+ VE + RN + P E HN P+ + +KTS S Sbjct: 605 IEPFERSVDPNNADIVEMVERNGIVVPKVTVTSHEDDVDSVHNTPMSVSSTLSVKTSSSK 664 Query: 496 VYQRKKRELVQKS 534 V + K++ KS Sbjct: 665 VPRNKRKRRKGKS 677 >SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr 2|||Manual Length = 216 Score = 25.8 bits (54), Expect = 6.1 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = +2 Query: 71 NVKPFTVFVEGNIGSGKTTFLE-HFR-QFEDITLLTEPVEM 187 NV F + + G+ G+GKTTF++ H +FE + T VE+ Sbjct: 6 NVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEV 46 >SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Schizosaccharomyces pombe|chr 3|||Manual Length = 785 Score = 25.8 bits (54), Expect = 6.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +1 Query: 205 LQSFGTHVQRSRKMGDEFQSYVSLTMLDM 291 L SF + +R R+ EF + SLT LDM Sbjct: 280 LSSFRSSFERDRRRQQEFLAPKSLTTLDM 308 >SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 325 Score = 25.4 bits (53), Expect = 8.1 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -2 Query: 217 QKIATFKISPHFNGLRQQSD 158 +KI+ FK+ P F+ L+ +SD Sbjct: 294 EKISPFKLEPQFHHLKDKSD 313 >SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 1616 Score = 25.4 bits (53), Expect = 8.1 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = -3 Query: 195 SRHISTGSVNKVISSN 148 S+H+ST S+N+V SSN Sbjct: 656 SKHLSTSSLNRVNSSN 671 >SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizosaccharomyces pombe|chr 1|||Manual Length = 1290 Score = 25.4 bits (53), Expect = 8.1 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +2 Query: 47 NISKMSANNVKPFTVFVEGNIGSGKTTFLE 136 N S+ S P T+ V G GSGKTT +E Sbjct: 17 NRSRESIQFFSPLTLIV-GQNGSGKTTIIE 45 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,909,021 Number of Sequences: 5004 Number of extensions: 62236 Number of successful extensions: 183 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 183 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 331187010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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