Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20982
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 29 0.87
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.5
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 27 3.5
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 26 4.6
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.6
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 6.1
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 26 6.1
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 26 6.1
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc... 25 8.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 8.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 8.1
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 59 MSANNVKPFTVFVEGNIGSGKTTFLE 136
M+ KP + V G GSGKTTF++
Sbjct: 1 MTDKEKKPCAIIVVGMAGSGKTTFMQ 26
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 53 SKMSANNVKPFTVFVEGNIGSGKTTFLEHFRQ 148
SK + ++P V + G++ GKTT L+ FR+
Sbjct: 162 SKKDSGPLRPPVVTLMGHVDHGKTTLLDAFRK 193
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 422 HSSSTANCAGWSVLFLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETY 264
H +A GWS++ + C + Y +L R + G C+S + TY
Sbjct: 109 HYYLSAMIIGWSLVTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLYISMTY 161
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/47 (23%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 462 FDSISKDITFNSV--PKEKKRARSEEQCVPLSYIEELHRLHEDWLIN 596
F++++ D+ SV KEK + +++C+ +++++ +L + L+N
Sbjct: 501 FETLNNDVDDESVIGEKEKLILKQKQKCLSEFFVDDIKKLLNEELLN 547
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 189 GEILKVAIFWNSCTKIQKNG 248
G ++ I W SC KI+K G
Sbjct: 148 GRLIDTGILWESCEKIEKLG 167
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +1
Query: 316 VKLMERSLFSARYCFVEHIMRNNTLHPAQFAVLDEWFRFIQHNIPIDADLIVYLKTSPSI 495
++ ERS+ VE + RN + P E HN P+ + +KTS S
Sbjct: 605 IEPFERSVDPNNADIVEMVERNGIVVPKVTVTSHEDDVDSVHNTPMSVSSTLSVKTSSSK 664
Query: 496 VYQRKKRELVQKS 534
V + K++ KS
Sbjct: 665 VPRNKRKRRKGKS 677
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 71 NVKPFTVFVEGNIGSGKTTFLE-HFR-QFEDITLLTEPVEM 187
NV F + + G+ G+GKTTF++ H +FE + T VE+
Sbjct: 6 NVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEV 46
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 205 LQSFGTHVQRSRKMGDEFQSYVSLTMLDM 291
L SF + +R R+ EF + SLT LDM
Sbjct: 280 LSSFRSSFERDRRRQQEFLAPKSLTTLDM 308
>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 217 QKIATFKISPHFNGLRQQSD 158
+KI+ FK+ P F+ L+ +SD
Sbjct: 294 EKISPFKLEPQFHHLKDKSD 313
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -3
Query: 195 SRHISTGSVNKVISSN 148
S+H+ST S+N+V SSN
Sbjct: 656 SKHLSTSSLNRVNSSN 671
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 47 NISKMSANNVKPFTVFVEGNIGSGKTTFLE 136
N S+ S P T+ V G GSGKTT +E
Sbjct: 17 NRSRESIQFFSPLTLIV-GQNGSGKTTIIE 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,021
Number of Sequences: 5004
Number of extensions: 62236
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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