Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20982
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101...    50   1e-06
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12...    31   1.2  
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590...    30   1.6  
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522...    30   2.1  
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492...    28   8.4  
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    28   8.4  

>01_06_1516 -
           37908284-37908497,37909666-37909733,37909809-37910186,
           37910315-37910393,37910433-37910749
          Length = 351

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = +1

Query: 250 DEFQSYVSLTMLDMHRRPAPTPVKLMERSLFSARYCFVEHIMRNNTLHPAQFAVLDEWFR 429
           D F +     M +        P++LMERS+FS R  FV  +   N ++  + ++ D WF 
Sbjct: 98  DAFYAEPQRVMQEKESSSGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFD 157

Query: 430 FIQHNIP-IDADLIVYLKTSPSIVYQRKKRELVQKSS 537
            +  ++P +  D  +YL+ SP   +   KR +V+K S
Sbjct: 158 PVVSSLPGLIPDGFIYLRASPDTCH---KRMMVRKRS 191



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
 Frame = +2

Query: 77  KPFTVFVEGNIGSGKTTFLEHFR----QFED-ITLLTEPVEMWRDL--KGCNLLELMYKD 235
           K  T  VEGNI  GKTTFL+       +  D + ++ EP+  W+D+     N+L+  Y +
Sbjct: 44  KRLTFCVEGNISVGKTTFLQRIANETIELRDLVEIVPEPIAKWQDVGPDHFNILDAFYAE 103

Query: 236 PEK 244
           P++
Sbjct: 104 PQR 106



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 516 RARSEEQCVPLSYIEELHRLHEDWLI 593
           R RSEE  V L Y+  LH  HE WL+
Sbjct: 188 RKRSEEGGVTLDYLRGLHEKHESWLL 213


>05_01_0018 +
           125697-126130,126231-126356,126726-126825,126950-126969,
           127118-127220,127331-127469,127577-127791,127873-128523
          Length = 595

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 190 PHFNGLRQQSDILKLTKMFQKCCFTATYVTFHEHGEWFNIVGTHF*DVRGN 38
           PH  G+  QS     T   Q    +  YV   +HGEWF   G+   D+ GN
Sbjct: 108 PHVAGIAGQS-----THGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGN 153


>08_01_0007 -
           57681-57728,58260-58336,58418-58464,58808-58908,
           59016-59108,59418-59540,59637-59755,60154-60510,
           60888-61011
          Length = 362

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +1

Query: 238 RKMGDEFQSYVSLTMLDMHRRPAPTPVKLMERSLFSARYCFVEHIMRNNTLHPAQF-AVL 414
           R   D   S  + T L  H   AP+    +  S FS  Y F  H M N   +P  F A  
Sbjct: 88  RGFADWSASTSAFTSLAAHSSTAPS--NAVHYS-FSPCYAFWTHYMLNKNAYPTSFPAPH 144

Query: 415 DEWFRFIQHNIPIDA 459
           D+  R   +N P DA
Sbjct: 145 DDHLRLANNNHPRDA 159


>04_03_0205 +
           12649724-12650191,12651493-12652025,12652114-12652239,
           12652625-12652724,12652880-12652899,12653035-12653137,
           12653213-12653351,12653448-12653662,12653772-12654320
          Length = 750

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 190 PHFNGLRQQSDILKLTKMFQKCCFTATYVTFHEHGEWFNIVGTHF*DVRGN 38
           PH  G+  QS     T   Q    +  Y+   +HGEWF   G+   D+ GN
Sbjct: 297 PHIAGIAGQS-----THGAQSVALSGGYLDDEDHGEWFLYTGSGGRDLSGN 342


>04_04_0318 +
           24347364-24348826,24348920-24349048,24349158-24349293,
           24349447-24349535,24349631-24349742,24349836-24349942,
           24350033-24350129
          Length = 710

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 519 ARSEEQCVPLSYIEELHRLHEDWLINR 599
           ++SE +C+ L  +E +  LH++W+++R
Sbjct: 462 SQSEVKCLMLQLLEGVKYLHDNWVLHR 488


>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 519 ARSEEQCVPLSYIEELHRLHEDWLINR 599
           ++SE +C+ L  +E +  LH++W+++R
Sbjct: 446 SQSEVKCLMLQLLEGVKYLHDNWVLHR 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,087,737
Number of Sequences: 37544
Number of extensions: 376362
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)