Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20982
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23029| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_23030| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_30744| Best HMM Match : UCH (HMM E-Value=0.22) 30 1.6
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.6
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 30 1.6
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 30 2.1
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 30 2.1
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 30 2.1
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
>SB_23029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +2
Query: 68 NNVKPFTVFVEGNIGSGKTTFLEHFRQ 148
++++ TV +EGNIGSGKTT L++FRQ
Sbjct: 133 HDMRKITVAIEGNIGSGKTTLLKYFRQ 159
>SB_23030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 510 KKRARSEEQCVPLSYIEELHRLHEDWLINR 599
K+R RSEE V + ++ELH HE WLI +
Sbjct: 113 KQRCRSEETSVSMDLLKELHDRHEAWLIEK 142
Score = 34.3 bits (75), Expect = 0.099
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 77 KPFTVFVEGNIGSGKTTFLEHFRQFEDITL 166
K TV VEGNIGSGKTT L++ + + L
Sbjct: 29 KNVTVAVEGNIGSGKTTLLKYLERMMTLKL 58
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 310 TPVKLMERSLFSARYCFVEHI-MRNNTLHPAQFAVLDEWFRFIQHNIPIDADLIVYLKTS 486
T +K +ER + C + + + + V ++WF +I DLI+YL+T+
Sbjct: 45 TLLKYLERMMTLKLACPCDQCYLTGGLMASVEHGVHNDWFTWITEKEQPQLDLIIYLRTT 104
Query: 487 PSIVYQR-KKRELVQKSSV 540
P +R K+R +++SV
Sbjct: 105 PEKCMERIKQRCRSEETSV 123
>SB_30744| Best HMM Match : UCH (HMM E-Value=0.22)
Length = 533
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -3
Query: 426 EPLIKYCK---LCWMECIISHNVFNEAV 352
E I++C LCW++C++S VFN+++
Sbjct: 139 EEYIQWCNSSALCWLDCVLSLLVFNKSI 166
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 NHSSSTANCAGWSVL-FLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDWNSS 249
N+ + C V+ +++ + A+NN S G +G C + +V TYDW +S
Sbjct: 207 NYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVPTTYDWATS 266
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 NHSSSTANCAGWSVL-FLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDWNSS 249
N+ + C V+ +++ + A+NN S G +G C + +V TYDW +S
Sbjct: 167 NYRPISLTCICCKVMEHIVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDWATS 226
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 NHSSSTANCAGWSVL-FLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDWNSS 249
N+ + C V+ +++ + A+NN S G +G C + +V TYDW +S
Sbjct: 402 NYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDWATS 461
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 NHSSSTANCAGWSVL-FLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDWNSS 249
N+ + C V+ +++ + A+NN S G +G C + +V TYDW +S
Sbjct: 265 NYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDWATS 324
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 NHSSSTANCAGWSVL-FLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDWNSS 249
N+ + C V+ +++ + A+NN S G +G C + +V TYDW +S
Sbjct: 243 NYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDWATS 302
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 NHSSSTANCAGWSVL-FLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDWNSS 249
N+ + C V+ +++ + A+NN S G +G C + +V TYDW +S
Sbjct: 85 NYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDWATS 144
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 NHSSSTANCAGWSVL-FLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDWNSS 249
N+ + C V+ +++ + A+NN S G +G C + +V TYDW +S
Sbjct: 85 NYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDWATS 144
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 425 NHSSSTANCAGWSVL-FLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDWNSS 249
N+ + C V+ +++ + A+NN S G +G C + +V TYDW +S
Sbjct: 119 NYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDWATS 178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,328,377
Number of Sequences: 59808
Number of extensions: 442509
Number of successful extensions: 1238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -