Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20982
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    30   1.9  
U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    29   4.3  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    29   4.3  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    29   4.3  
AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    29   4.3  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      29   4.3  

>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/93 (22%), Positives = 41/93 (44%)
 Frame = +3

Query: 18  LIKNCFQLPLTSQK*VPTMLNHSPCSWKVT*VAVKQHFWNIFVSLRISLC*RSPLKCGEI 197
           L+ +  QLP  ++  +P  L  +     +T +AVK   W+     R+  C   P    ++
Sbjct: 345 LVGDMHQLPPYTEDALPAELKRAAVGEPLT-LAVKGRRWSSMHLTRVHRC---PKMITDL 400

Query: 198 LKVAIFWNSCTKIQKNGR*IPVIRFLDDVGHAP 296
           L    + N+ T  +K    +P++  ++   H P
Sbjct: 401 LGAVFYGNTLTSTRKAVNRVPILEAMELPSHHP 433


>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 110 GSGKTTFLEHFRQFE-DITLLTEPVEMWRDLKGCNLLELMYKDPEKW 247
           G  K + L H   FE  I        ++  L GC L + M+ +PEK+
Sbjct: 447 GKPKNSILPHHHPFEISINTAVRQYPLFSSLYGCRLGDRMFAEPEKF 493


>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 35  SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 142
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 35  SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 142
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 35  SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 142
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 361 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 396


>AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical
           protein T12B3.4 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 274 RKRMTGIHRPFFWIFVHEFQKIATFKISPHFNGL 173
           +K +T + R F  +++H F +I      PH N L
Sbjct: 212 KKILTRLFRVFVHVYIHHFDRIRELGAEPHANTL 245


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 35  SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 142
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 35  SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 142
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,029,746
Number of Sequences: 27780
Number of extensions: 343712
Number of successful extensions: 899
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)