Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20982
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72040.1 68414.m08327 deoxynucleoside kinase family contains ...    53   2e-07
At4g35870.1 68417.m05094 expressed protein                             29   3.0  
At5g03050.1 68418.m00253 expressed protein                             29   4.0  
At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa...    28   5.3  
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa...    28   5.3  
At1g67580.1 68414.m07699 protein kinase family protein contains ...    28   5.3  
At5g41000.1 68418.m04984 oligopeptide transporter OPT family pro...    28   7.0  
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa...    28   7.0  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    27   9.3  

>At1g72040.1 68414.m08327 deoxynucleoside kinase family contains
           Pfam profile: PF01712 deoxynucleoside kinase
          Length = 580

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +1

Query: 256 FQSYVSLTMLDMHRRPAP--TPVKLMERSLFSARYCFVEHIMRNNTLHPAQFAVLDEWFR 429
           FQ+YV +T L   +  A    P++LMERS+FS R  FV  +     ++  + ++ D WF 
Sbjct: 331 FQNYVFVTRLMQEKESASGVKPLRLMERSVFSDRMVFVRAVHEAKWMNEMEISIYDSWFD 390

Query: 430 FIQHNIP-IDADLIVYLKTSPSIVYQR 507
            +  ++P +  D  +YL+ SP   ++R
Sbjct: 391 PVVSSLPGLVPDGFIYLRASPDTCHKR 417



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
 Frame = +2

Query: 68  NNVKPFTVFVEGNIGSGKTTFLEHFR----QFED-ITLLTEPVEMWRDL--KGCNLLELM 226
           N  K  T  VEGNI  GK+TFL+       + +D + ++ EPV+ W+D+     N+L+  
Sbjct: 261 NVKKRLTFCVEGNISVGKSTFLQRIANETVELQDLVEIVPEPVDKWQDVGPDHFNILDAF 320

Query: 227 YKDPEKWA 250
           Y +P+++A
Sbjct: 321 YSEPQRYA 328



 Score = 34.3 bits (75), Expect = 0.081
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 516 RARSEEQCVPLSYIEELHRLHEDWLI 593
           R R+EE  V L Y+++LH  HE WL+
Sbjct: 421 RKRAEEGGVSLKYLQDLHEKHESWLL 446


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 47  NISKMSANNVKPFTVFVEG---NIGSGKTTFLEHFR 145
           NIS  +AN+   FT+ V+G   N+GS +  F + FR
Sbjct: 193 NISDPNANSTAVFTIMVQGLPKNLGSDRVEFEDCFR 228


>At5g03050.1 68418.m00253 expressed protein 
          Length = 140

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 68  NNVKPFTVFVEGNIGSGKTTFLEHFRQFED--ITLLTEPVEMWRD-LKGCNLLE 220
           + ++ FT  V   + +GKT   E   +FE+  I +  E VE W+D +K   LL+
Sbjct: 63  DKIESFTQTVSNLLETGKTMLKELSNEFEERLIMIHKEHVEKWQDEIKELRLLD 116


>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 11  KLVD*KLLSVASNISKMSAN-NVKPFTVFVEGNIGSGKTTFL 133
           KLVD  L  +  + +  S+N   KP  + V G  GSGKT+FL
Sbjct: 18  KLVD-SLDKLRVSAASSSSNFKKKPIIIIVVGMAGSGKTSFL 58


>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 11  KLVD*KLLSVASNISKMSAN-NVKPFTVFVEGNIGSGKTTFL 133
           KLVD  L  +  + +  S+N   KP  + V G  GSGKT+FL
Sbjct: 18  KLVD-SLDKLRVSAASSSSNFKKKPIIIIVVGMAGSGKTSFL 58


>At1g67580.1 68414.m07699 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 752

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = +3

Query: 507 EKKRARSEEQCVPLSYIEELHRLHEDWLINR 599
           +++ ++SE +C+ L  +E +  LH++W+++R
Sbjct: 499 KQRFSQSEVKCLMLQLLEGVKYLHDNWVLHR 529


>At5g41000.1 68418.m04984 oligopeptide transporter OPT family
           protein contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 670

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = +1

Query: 436 QHNIPIDADLIVYLKTSPSIVYQRKKRELV 525
           QHN+P+  D++   KTS  ++ ++KKR+++
Sbjct: 351 QHNLPVFTDILDKSKTS-VLMREKKKRDII 379


>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 645

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 190 PHFNGLRQQSDILKLTKMFQKCCFTATYVTFHEHGEWFNIVGTHF*DVRGN 38
           PH  G+  QS     T   Q    +  Y    +HGEWF   G+   D+ GN
Sbjct: 298 PHVAGIAGQS-----TYGAQSVALSGGYKDDEDHGEWFLYTGSGGRDLSGN 343


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 53  SKMSANNVKPFTVFVEGNIGSGKTTFLEH 139
           +K+  +N  P T+ + G +GSGKTT L H
Sbjct: 81  TKIPPDNRIPATI-ITGFLGSGKTTLLNH 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,897,200
Number of Sequences: 28952
Number of extensions: 313770
Number of successful extensions: 936
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)