Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20978
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 29 0.94
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 2.2
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 2.9
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.8
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 3.8
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 5.0
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 6.6
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 6.6
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 26 6.6
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 6.6
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 8.7
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 25 8.7
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 28.7 bits (61), Expect = 0.94
Identities = 23/105 (21%), Positives = 53/105 (50%)
Frame = +2
Query: 74 KVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLK 253
K P +E P V+ L+ + I +I +++ + ++ +VV+ P + ++ +I+ +
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435
Query: 254 MI*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 388
+ +KM K+ L P PR++ +T+H+I + ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/61 (19%), Positives = 27/61 (44%)
Frame = +1
Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTA 426
+ED++ + P + + R + P P Q+ E +N + +E + N ++T
Sbjct: 609 LEDEISEISSPSYSSDDDRKTISETQPAPKQNINEEFENSTSTDGSETNKNEQGNSLSTP 668
Query: 427 E 429
+
Sbjct: 669 D 669
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 292 EIKRPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 429
E +P D RN GP Q + + + PE H ++ E+ + + ++ N E
Sbjct: 148 EEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 334 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 420
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 597 TIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 713
TI +PS++E+ ++ + +ETN NS L + SE
Sbjct: 168 TIVSPSLKESDFESEEKATNDNNGLIETNHNSKLEESSE 206
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 323 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 430
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 256 DLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSS 402
D E+ + P + E K P + GP + H+ +H+E E+ + S
Sbjct: 388 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQS 436
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 8 ETTRGPVANYIRARRTRTSIPDKVPEAEDKPLNVVENLSSEQELIDQ 148
+TT P N +TR IP + + PLN+ ++ + + I Q
Sbjct: 120 QTTNSPFINVTYILKTRVKIPSQPDFVFEYPLNLKRSIVTNADKIAQ 166
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 11 TTRGPVANYIRARRTRTSIPDKVPEAEDKPLNVVENLSSEQEL 139
T +GP YI T+IP K + KP+ + + L S + L
Sbjct: 228 TYQGPKEQYIPMTSHSTNIPVKPQMKKSKPITIGKPLISMEHL 270
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 331 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 498
PP H ++ TQ HEDA+ S + + I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 17 RGPVANYIRARRTRTSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRAN 190
+G N +R +IP + A P N+SS +NTI ++D++L+A+
Sbjct: 222 KGLEMNGFSKKRDNVNIPKRTYSARSIP----SNISSTNVATTPSNTIFEMDDTLKAD 275
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 59 TSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDI 169
TSI + +++K NV+E+LSS + + +++ D+
Sbjct: 368 TSINALLERSKEKKANVIESLSSAMDAVLATSSLDDL 404
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 326 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 469
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 558 FVFERRNFLGNVASWPGL 505
F F++R+ LGNV W G+
Sbjct: 506 FAFKKRDILGNVFFWIGM 523
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,531
Number of Sequences: 5004
Number of extensions: 51902
Number of successful extensions: 230
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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