Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20978
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0107 + 16086724-16086799,16088007-16088288,16088523-160885... 32 0.56
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 0.98
06_01_0494 + 3539804-3539949,3540466-3540826 31 1.3
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 31 1.3
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704... 30 1.7
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 2.3
05_07_0250 + 28669593-28669660,28669759-28669817,28670144-286702... 30 2.3
04_03_0070 + 10677677-10679989 29 3.0
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 29 3.0
02_02_0233 + 8105765-8107840 28 6.9
04_01_0532 - 6938763-6941177 28 9.1
02_05_0916 - 32706039-32706332,32707483-32708103,32708450-327090... 28 9.1
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 28 9.1
>01_04_0107 +
16086724-16086799,16088007-16088288,16088523-16088585,
16088684-16089045
Length = 260
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +2
Query: 20 GPVANYIRARRTRTSIPDKVPEAEDKPLNVVENLSS----EQELIDQANT-IKDIDNSLR 184
G +A + R++ S+ + +P++ KP+ V +SS E L D A+ +K+ D+
Sbjct: 162 GKMAFSVLIFRSKNSLAELIPDS--KPIEEVLAISSFEFPESLLKDDASAFVKEEDDPRE 219
Query: 185 ANKKEVVDIPVKVIVEEIKPSLKMI 259
+ D+P + +VE KPSL ++
Sbjct: 220 VIELPKTDLPSQPLVEPFKPSLCLL 244
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 301 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 390
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>06_01_0494 + 3539804-3539949,3540466-3540826
Length = 168
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 406 KNDINTAEIALRQGFQEVSDGIGKWYART-EQINEPRPACNIS 531
K I + I+L+ Q+ S ++R E+INEP P C+IS
Sbjct: 29 KKQITKSVISLKLALQQHSTSSSSPFSRPRERINEPSPGCSIS 71
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/93 (25%), Positives = 45/93 (48%)
Frame = +2
Query: 77 VPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKM 256
+ A+ K L++ E S EQEL +++ D+ L+AN + + +K +EE+K
Sbjct: 673 ISSADSKTLSL-EAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIK--IEELKRQRDN 729
Query: 257 I*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 355
+ KTL+ + G + ++ RS+ K
Sbjct: 730 L-KTLEANLDQTVRDGAKDLEQLMSSRSMHLAK 761
>08_02_1053 -
23968372-23968442,23969245-23969294,23970396-23970457,
23970527-23970709,23970737-23970901,23972235-23972408
Length = 234
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 367 EHHEDA-EKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINEPRPACNISKKIS 543
E H+D K V +ND + E+ + KW+A EQ+++ N+S KIS
Sbjct: 123 ESHDDLMAKTVKIYENDFKDGPFLFMHCWNELKNQ-PKWHAYLEQLDKSNKRKNVSHKIS 181
Query: 544 ALK 552
K
Sbjct: 182 YAK 184
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +2
Query: 47 RRTRTSIPDKVPEAEDKPLNVVE-NLSSE---QELIDQANTIKDIDNSLR 184
++T+ ++ + V E + + N+ E N SSE QEL D+ N++KD N L+
Sbjct: 379 KQTKVNLENAVSELKKEVENLTEQNRSSELLIQELRDEINSLKDSKNELQ 428
>05_07_0250 +
28669593-28669660,28669759-28669817,28670144-28670248,
28670983-28671019,28671446-28671542,28671700-28671781,
28671870-28671939,28672049-28672212,28672897-28672940,
28673021-28673176,28673273-28673494,28673736-28673883,
28673947-28674034,28675032-28675159,28675259-28675323,
28675380-28675426,28675427-28675539,28676003-28676019
Length = 569
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 244 VVEDDLENVEVPDENEEIKRPLVDL--RNPGPPQHQE-HETQNPEHHEDAEKIVSSVKND 414
+ +DD PD + ++ LV R PQ QE H + HE+A++ +SVKN+
Sbjct: 176 ITDDDATFNVTPDGHPQVPSNLVPSPPRQEDSPQQQENHHAASSPLHEEAQQGGASVKNE 235
>04_03_0070 + 10677677-10679989
Length = 770
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +1
Query: 364 PEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINEPRPA 519
PE +D +++++ + + A +AL + + S+G+ YA+ Q+ +P P+
Sbjct: 606 PEQDKDVDRLITRLVSP-EEAHLALMELMKWRSEGLDPLYAQAVQVRQPDPS 656
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 340 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQIN 504
H+ + Q + H EDAEK+V SVK + E G +V G ++ +N
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLN 209
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 367 EHHEDAEKIVSSVKNDINTAEIALRQ--GFQEVSDGIGKWYARTEQ 498
EH KI+ ++ D+ + ++LR + +D G W R EQ
Sbjct: 426 EHRSSTAKIIGFIRKDLTSGWVSLRSVADHRRFNDRRGHWTLRREQ 471
>04_01_0532 - 6938763-6941177
Length = 804
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 412 DINTAEIALRQGFQEVSDGIGKWYARTEQINEPRP 516
D N++ L F ++SD WYA+T + EP+P
Sbjct: 56 DGNSSFYLLAIWFNKISDKTATWYAKTSE-QEPQP 89
>02_05_0916 -
32706039-32706332,32707483-32708103,32708450-32709070,
32709183-32709752,32709840-32709918,32710002-32710075,
32711336-32711398
Length = 773
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/91 (24%), Positives = 41/91 (45%)
Frame = +1
Query: 235 NQTVVEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 414
++ ++ ++ E+ + ++ ++ L+D+RN E E+ +KI + V +
Sbjct: 553 SEAEIQKMVQEAELHSQKDQERKALIDIRNNADTTIYSVEKSLGEYR---DKIPAEVATE 609
Query: 415 INTAEIALRQGFQEVSDGIGKWYARTEQINE 507
I TA LR SD I K A E N+
Sbjct: 610 IETAIADLRSVM--TSDDIEKIKANIEAANK 638
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 313 DLRNPGPPQHQEH-ETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYAR 489
D+ P P++ ++ E +PE+++D E S+ + I T + ++QG Q + + I
Sbjct: 408 DVNVPSSPENFKYPEASSPENYKDPEAHQSANFDAIMTQLMQIQQGCQFLDNKIS----- 462
Query: 490 TEQINEPRPACNISKKISALKYK 558
T+ I+ + I A+KY+
Sbjct: 463 TKLISIENTCIQNRRDIQAIKYR 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,973,287
Number of Sequences: 37544
Number of extensions: 329503
Number of successful extensions: 1252
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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