Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20978
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.57 
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.00 
SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23)                    31   1.00 
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)             30   1.7  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.3  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     29   4.0  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)                   28   9.3  
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            28   9.3  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  28   9.3  
SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_38941| Best HMM Match : Remorin_C (HMM E-Value=0.25)                28   9.3  
SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)                 28   9.3  

>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 325 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIG--KWYAR 489
           P PP H + E     H E  E+I S  K+   D+  A+  L++  +++ + +G  ++   
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVGYLRYMEA 341

Query: 490 TEQINEPRPACNISKKI 540
            + +N+ +P    + KI
Sbjct: 342 KQLLNKTKPNYKEAYKI 358


>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 241 TVVEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDA 384
           T+ +D+L + ++P E  E +   V+ + P P +  E E   P+  E A
Sbjct: 101 TLTDDELSDDDIPKEIMEAEEQQVENKFPEPEEEDEEEDDTPQGLEGA 148


>SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23)
          Length = 158

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 241 TVVEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDA 384
           T+ +D+L + ++P E  E +   V+ + P P +  E E   P+  E A
Sbjct: 12  TLTDDELSDDDIPKEIMEAEEQQVENKFPEPEEEDEEEDDTPQGLEGA 59


>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
          Length = 149

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 56  RTSIPDKVPEAEDKPLNVVENLSSEQELIDQ-ANTIKDIDNSLRANKKEVVDIPVKVIVE 232
           + SIP   P+ + K LN VEN++  +E  ++ A+ + D+ N + + K E     V   V+
Sbjct: 72  KDSIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVK 130

Query: 233 EIK 241
            +K
Sbjct: 131 SLK 133


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +2

Query: 41  RARRTRTSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVK 220
           R R+ +    +KV E+ D  +  +EN     EL +Q   IK+ +  L+  +KE+  +  K
Sbjct: 593 RDRQIQNLSLEKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKK 647

Query: 221 VIVEEIKPSLK 253
           +I  E+   LK
Sbjct: 648 II--ELSDKLK 656


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +1

Query: 271 EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 450
           +V   ++ I+     LR+     H ++   +  HH   +KI S          + +  GF
Sbjct: 49  DVSSGSDSIENEKFTLRDDHTDNHHQNHHDHHHHHHHDKKIDSKTSIATVAWMVIVSDGF 108

Query: 451 QEVSDGI 471
             +SDG+
Sbjct: 109 HNLSDGL 115


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 268  VEVPDENEEIKRPLVDLRNPGPPQHQEHETQN---PEHHEDAEKI--VSSVKNDINTAEI 432
            +  PDE E +   + DL NP   +  E E Q+     + +D EKI  V S     N + I
Sbjct: 828  INSPDEREIVLSEIYDLDNPSDDEELETEIQDALETANEQDKEKILAVYSALRSPNLSGI 887

Query: 433  ALRQ 444
             L Q
Sbjct: 888  ELAQ 891


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
 Frame = +1

Query: 271 EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIAL---- 438
           EVPD+   +   +  + +  PP+H+     N  HH    K  S+ +  I  AE  L    
Sbjct: 47  EVPDQ-VWLADDVSSVSSYSPPKHKHSSKSNGHHHNSRHKSESAKEPPILKAERKLLAST 105

Query: 439 ----RQGFQEVSDGIGKWYARTEQINEPRPACNISKKISALKY 555
                  +  VSD I +    T+   + R +  IS++  A  Y
Sbjct: 106 SPTRSANYPYVSDRIPRKSTYTQDFADGRKSKAISRRDEAYGY 148


>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
          Length = 999

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 25/93 (26%), Positives = 39/93 (41%)
 Frame = +1

Query: 238 QTVVEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDI 417
           +T  E   EN EVP+ NEE      D R  G     E E    E +E   ++  + KN +
Sbjct: 263 ETHDEKPEENPEVPEVNEEDFIRAADARRRGEDGDTE-ELDGEEKYEHLHQVFVT-KNAV 320

Query: 418 NTAEIALRQGFQEVSDGIGKWYARTEQINEPRP 516
              E+  R+ F+E++          +  + P P
Sbjct: 321 LCTEV--RKNFKELTRACSAAQEHVQGEDNPLP 351


>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +3

Query: 513 ASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLK--SLETNF 686
           AS    QEN   QI  LNE L  +    T A    E  QN     T  + +K  S+ ++ 
Sbjct: 128 ASASITQENAQKQINHLNELLTTLTDIITSAKEDWEGEQNSVGLLTCGAQVKAPSVNSSS 187

Query: 687 NSGLNQLSEGIPIVAT 734
           NS    + E I +  T
Sbjct: 188 NSPDESVIEAINVFVT 203


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 107 VVENLSSEQELIDQANTIKDIDNSLRANKKEVVD 208
           V E + S++E+ D  N +KD+ +S+   KK+  D
Sbjct: 302 VKEAMPSKKEIPDMRNNLKDLKSSINEVKKQTDD 335


>SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 259 LENVEVPDENEEIKRP---LVDLRNPGPPQHQEHETQNPEHHED 381
           L N  +PDE+ E  RP   L DL +  PP     E  +  +HED
Sbjct: 184 LVNTRMPDESPEPTRPPPPLDDLDDLPPPPPPPPEDDSIHNHED 227


>SB_38941| Best HMM Match : Remorin_C (HMM E-Value=0.25)
          Length = 377

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 201 TSFLFARRLLSMSLIVLAWSMSSCSLDKFSTTFKGLSS-ASGTLSGMEVRVRRARM*LAT 25
           T  ++A + L   L   A    S SLDK+  T   L    +G  +G+E+ +   R+  + 
Sbjct: 154 TRVVWATKGLETILDRCADLFESSSLDKYKRTTYWLPPIGAGRFAGLEIEIEPTRVFRSR 213

Query: 24  GPRVVSWS 1
             R +SW+
Sbjct: 214 DGRQISWN 221


>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
          Length = 909

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 468 YWK-MVRSYRAN*RAQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSV 617
           YW+ +V++YR   R   S+ HFQE+       L+ T  ++  A T  AP +
Sbjct: 609 YWRILVKAYRIKTRQLYSVMHFQEHIS---MNLDVTFLYVIMAFTEDAPQL 656


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,461,611
Number of Sequences: 59808
Number of extensions: 369742
Number of successful extensions: 1375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)