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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20978
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43920.1 68416.m04701 ribonuclease III family protein similar...    32   0.35 
At5g54050.1 68418.m06722 DC1 domain-containing protein                 31   0.62 
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ...    31   0.62 
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi...    31   0.62 
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    31   0.82 
At3g61390.2 68416.m06872 U-box domain-containing protein several...    31   0.82 
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin...    31   1.1  
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ...    30   1.9  
At1g12380.1 68414.m01431 expressed protein                             30   1.9  
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ...    29   2.5  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    29   4.4  
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide...    29   4.4  
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    28   5.8  
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains...    28   5.8  
At5g54020.1 68418.m06719 expressed protein                             28   7.6  
At3g17090.1 68416.m02180 protein phosphatase 2C family protein /...    28   7.6  
At2g40435.1 68415.m04988 expressed protein                             28   7.6  
At2g28590.1 68415.m03474 protein kinase family protein contains ...    28   7.6  
At1g33060.2 68414.m04076 no apical meristem (NAM) family protein...    28   7.6  
At1g33060.1 68414.m04075 no apical meristem (NAM) family protein...    28   7.6  
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik...    28   7.6  

>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
            RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
            GI:6102610; contains Pfam profiles PF02170: PAZ domain,
            PF00636: RNase3 domain
          Length = 1531

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 449  SRKCQTVLENGTLVPSKLTSPGQLATFP 532
            SRK Q  + NG   P + T+PGQ + FP
Sbjct: 1022 SRKLQGYIRNGAFEPRRWTAPGQFSLFP 1049


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
           V D LE  +VP+E EEIK P   +   G   H  HE
Sbjct: 268 VWDGLELEDVPEEEEEIKDPFKVINEKGDIVHFSHE 303


>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 488

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
           V D L+  +VPDE EEIK P   +   G   H  HE
Sbjct: 256 VWDGLDLEDVPDEEEEIKDPFKVINENGDIVHISHE 291


>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 452

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 355 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 492
           T  P HH D  + VS +K+++ T   + ++ FQ V D  G+W  RT
Sbjct: 20  TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 316 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 471
           L  P      +   Q P+H E+ E +++ +KND        R G  ++S  +
Sbjct: 64  LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115


>At3g61390.2 68416.m06872 U-box domain-containing protein several
           hypothetical proteins - Arabidopsis thaliana
          Length = 435

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 274 VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 450
           + +E EE+K  L ++    G  + +E  T N  H E  +  +  + +DI         GF
Sbjct: 319 IREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAADGF 376

Query: 451 QEVSDGIGKWYAR 489
               + I +W+ R
Sbjct: 377 TYEGEAISRWFER 389


>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 283

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +1

Query: 259 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIN 420
           L+ V++ ++ EE  +  VDL +P P + +E E +N ++ ED +K     K D N
Sbjct: 71  LDPVKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPDNN 123


>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 419

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
           V D LE  +VP+E EEI+ P   + + G   H  HE
Sbjct: 246 VWDGLELEDVPEEEEEIEDPFKVINDKGDIIHFSHE 281


>At1g12380.1 68414.m01431 expressed protein
          Length = 793

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +1

Query: 304 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 483
           PL  +R+         +  +PE  +D +K+++ + +  + A IAL +  +  ++G+   Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667

Query: 484 ARTEQINEPRP 516
           AR  Q+ E  P
Sbjct: 668 ARAVQMKERDP 678


>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 596

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
           V D LE  +VP+E EEI+ P   +   G   H  HE
Sbjct: 261 VWDGLELEDVPEEEEEIEDPFKVINEKGDIIHFSHE 296


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
           V D +E  +VP+E+EE++ P   +   G   H  HE
Sbjct: 228 VWDGIELEDVPEEDEELEDPFKVINEKGDIVHFSHE 263


>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
           identical to cDNA tubulin folding cofactor A,
           GI:20514256, SP|O04350 Tubulin-specific chaperone A
           (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
           cofactor A homolog) {Arabidopsis thaliana}
          Length = 113

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 274 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 429
           +PD ++ ++  L DL++      +  E + PE  EDA+K V+ V+    T +
Sbjct: 62  IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112


>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
            family protein similar to SMC1 protein [Bos taurus]
            GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
            [Xenopus laevis] GI:3328231; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
 Frame = +2

Query: 56   RTSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDID------NSLRANKKEVVDIPV 217
            + SI DK+P+ E +  N++E +   +  + +A    ++D      N L     E+VD   
Sbjct: 744  KKSIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIY 803

Query: 218  KVIVEEI-KPSLKMI*KT-LKCRMKMRKSR 301
            K   + +  P++++  +T LK   K  + R
Sbjct: 804  KDFSQSVGVPNIRVYEETQLKTAEKEAEER 833


>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 475

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 65  IPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKK 196
           I   + E +  P +V ENL  +   ID   ++KD+  +L   KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
           V D LE  +VP+E EEI+ P   +   G   H  HE
Sbjct: 238 VWDGLELEDVPEEEEEIEDPFKVVNEKGDIVHFCHE 273


>At3g17090.1 68416.m02180 protein phosphatase 2C family protein /
           PP2C family protein similar to Ser/Thr protein
           phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
           thaliana]; similar to protein phosphatase 2C
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain;
          Length = 384

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 621 ETQNKASFETIESGLKSLETNFNSGLNQLSEGIPIVAT 734
           ETQ   + ETIE    + E  F S +++L + IP +AT
Sbjct: 114 ETQGVVTRETIERAFHATEEGFASIVSELWQEIPNLAT 151


>At2g40435.1 68415.m04988 expressed protein
          Length = 158

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 25/99 (25%), Positives = 41/99 (41%)
 Frame = +3

Query: 453 GSVRRYWKMVRSYRAN*RAQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQN 632
           GS++  ++++RS   N  A+       +     IQKL + +       T    S E T  
Sbjct: 9   GSLQEKFQLLRSI-TNSHAENDTSIIMDA-SKYIQKLKQKVERFNQDPTAEQSSSEPTDP 66

Query: 633 KASFETIESGLKSLETNFNSGLNQLSEGIPIVATFKADG 749
           K    T+E+  K    N  SG NQ    + ++  F+  G
Sbjct: 67  KTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIG 105


>At2g28590.1 68415.m03474 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 424

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 335 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSPG 514
           R+ KS K     TTK     F P K+T+   +    + S  C  V   G +    +T   
Sbjct: 6   RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63

Query: 515 QLA 523
           QLA
Sbjct: 64  QLA 66


>At1g33060.2 68414.m04076 no apical meristem (NAM) family protein
           similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
           truncatula)
          Length = 652

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 567 HSTFVFERRNF-LGNVASWPGLVNLLGTSVPF 475
           H+    +R++F L N+  WPG   LL T  PF
Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375


>At1g33060.1 68414.m04075 no apical meristem (NAM) family protein
           similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
           truncatula)
          Length = 648

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 567 HSTFVFERRNF-LGNVASWPGLVNLLGTSVPF 475
           H+    +R++F L N+  WPG   LL T  PF
Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375


>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
           transposon protein GB:AAB95292 GI:2088658 from
           [Arabidopsis thaliana]
          Length = 1148

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 244 VVEDDLENVEVPDENEE-IKRPLVDLRNPGPPQHQEHETQNPEHHEDAEK 390
           V + ++EN+  PD++EE I   +V+L N    +H+ HE+   +   D ++
Sbjct: 448 VFQSEVENLAYPDKHEESIAFGMVNLSNES-SRHESHESSFSDQLGDMDQ 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,108
Number of Sequences: 28952
Number of extensions: 270467
Number of successful extensions: 1121
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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