Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20978
(749 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 32 0.35
At5g54050.1 68418.m06722 DC1 domain-containing protein 31 0.62
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 31 0.62
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.62
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.82
At3g61390.2 68416.m06872 U-box domain-containing protein several... 31 0.82
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 31 1.1
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 30 1.9
At1g12380.1 68414.m01431 expressed protein 30 1.9
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ... 29 2.5
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 4.4
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 4.4
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 28 5.8
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 28 5.8
At5g54020.1 68418.m06719 expressed protein 28 7.6
At3g17090.1 68416.m02180 protein phosphatase 2C family protein /... 28 7.6
At2g40435.1 68415.m04988 expressed protein 28 7.6
At2g28590.1 68415.m03474 protein kinase family protein contains ... 28 7.6
At1g33060.2 68414.m04076 no apical meristem (NAM) family protein... 28 7.6
At1g33060.1 68414.m04075 no apical meristem (NAM) family protein... 28 7.6
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 28 7.6
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 449 SRKCQTVLENGTLVPSKLTSPGQLATFP 532
SRK Q + NG P + T+PGQ + FP
Sbjct: 1022 SRKLQGYIRNGAFEPRRWTAPGQFSLFP 1049
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
V D LE +VP+E EEIK P + G H HE
Sbjct: 268 VWDGLELEDVPEEEEEIKDPFKVINEKGDIVHFSHE 303
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
V D L+ +VPDE EEIK P + G H HE
Sbjct: 256 VWDGLDLEDVPDEEEEIKDPFKVINENGDIVHISHE 291
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 355 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 492
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 316 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 471
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 274 VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 450
+ +E EE+K L ++ G + +E T N H E + + + +DI GF
Sbjct: 319 IREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAADGF 376
Query: 451 QEVSDGIGKWYAR 489
+ I +W+ R
Sbjct: 377 TYEGEAISRWFER 389
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +1
Query: 259 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIN 420
L+ V++ ++ EE + VDL +P P + +E E +N ++ ED +K K D N
Sbjct: 71 LDPVKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPDNN 123
>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 419
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
V D LE +VP+E EEI+ P + + G H HE
Sbjct: 246 VWDGLELEDVPEEEEEIEDPFKVINDKGDIIHFSHE 281
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 304 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 483
PL +R+ + +PE +D +K+++ + + + A IAL + + ++G+ Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667
Query: 484 ARTEQINEPRP 516
AR Q+ E P
Sbjct: 668 ARAVQMKERDP 678
>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 596
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
V D LE +VP+E EEI+ P + G H HE
Sbjct: 261 VWDGLELEDVPEEEEEIEDPFKVINEKGDIIHFSHE 296
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
V D +E +VP+E+EE++ P + G H HE
Sbjct: 228 VWDGIELEDVPEEDEELEDPFKVINEKGDIVHFSHE 263
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 274 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 429
+PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T +
Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Frame = +2
Query: 56 RTSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDID------NSLRANKKEVVDIPV 217
+ SI DK+P+ E + N++E + + + +A ++D N L E+VD
Sbjct: 744 KKSIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIY 803
Query: 218 KVIVEEI-KPSLKMI*KT-LKCRMKMRKSR 301
K + + P++++ +T LK K + R
Sbjct: 804 KDFSQSVGVPNIRVYEETQLKTAEKEAEER 833
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 65 IPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKK 196
I + E + P +V ENL + ID ++KD+ +L KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448
>At5g54020.1 68418.m06719 expressed protein
Length = 556
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354
V D LE +VP+E EEI+ P + G H HE
Sbjct: 238 VWDGLELEDVPEEEEEIEDPFKVVNEKGDIVHFCHE 273
>At3g17090.1 68416.m02180 protein phosphatase 2C family protein /
PP2C family protein similar to Ser/Thr protein
phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
thaliana]; similar to protein phosphatase 2C
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain;
Length = 384
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 621 ETQNKASFETIESGLKSLETNFNSGLNQLSEGIPIVAT 734
ETQ + ETIE + E F S +++L + IP +AT
Sbjct: 114 ETQGVVTRETIERAFHATEEGFASIVSELWQEIPNLAT 151
>At2g40435.1 68415.m04988 expressed protein
Length = 158
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/99 (25%), Positives = 41/99 (41%)
Frame = +3
Query: 453 GSVRRYWKMVRSYRAN*RAQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQN 632
GS++ ++++RS N A+ + IQKL + + T S E T
Sbjct: 9 GSLQEKFQLLRSI-TNSHAENDTSIIMDA-SKYIQKLKQKVERFNQDPTAEQSSSEPTDP 66
Query: 633 KASFETIESGLKSLETNFNSGLNQLSEGIPIVATFKADG 749
K T+E+ K N SG NQ + ++ F+ G
Sbjct: 67 KTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIG 105
>At2g28590.1 68415.m03474 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 424
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 335 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSPG 514
R+ KS K TTK F P K+T+ + + S C V G + +T
Sbjct: 6 RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63
Query: 515 QLA 523
QLA
Sbjct: 64 QLA 66
>At1g33060.2 68414.m04076 no apical meristem (NAM) family protein
similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
truncatula)
Length = 652
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 567 HSTFVFERRNF-LGNVASWPGLVNLLGTSVPF 475
H+ +R++F L N+ WPG LL T PF
Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375
>At1g33060.1 68414.m04075 no apical meristem (NAM) family protein
similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
truncatula)
Length = 648
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 567 HSTFVFERRNF-LGNVASWPGLVNLLGTSVPF 475
H+ +R++F L N+ WPG LL T PF
Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 244 VVEDDLENVEVPDENEE-IKRPLVDLRNPGPPQHQEHETQNPEHHEDAEK 390
V + ++EN+ PD++EE I +V+L N +H+ HE+ + D ++
Sbjct: 448 VFQSEVENLAYPDKHEESIAFGMVNLSNES-SRHESHESSFSDQLGDMDQ 496
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,108
Number of Sequences: 28952
Number of extensions: 270467
Number of successful extensions: 1121
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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