BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20978 (749 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g43920.1 68416.m04701 ribonuclease III family protein similar... 32 0.35 At5g54050.1 68418.m06722 DC1 domain-containing protein 31 0.62 At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 31 0.62 At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.62 At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.82 At3g61390.2 68416.m06872 U-box domain-containing protein several... 31 0.82 At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 31 1.1 At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 30 1.9 At1g12380.1 68414.m01431 expressed protein 30 1.9 At5g54040.1 68418.m06721 DC1 domain-containing protein contains ... 29 2.5 At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 4.4 At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 4.4 At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 28 5.8 At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 28 5.8 At5g54020.1 68418.m06719 expressed protein 28 7.6 At3g17090.1 68416.m02180 protein phosphatase 2C family protein /... 28 7.6 At2g40435.1 68415.m04988 expressed protein 28 7.6 At2g28590.1 68415.m03474 protein kinase family protein contains ... 28 7.6 At1g33060.2 68414.m04076 no apical meristem (NAM) family protein... 28 7.6 At1g33060.1 68414.m04075 no apical meristem (NAM) family protein... 28 7.6 At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 28 7.6 >At3g43920.1 68416.m04701 ribonuclease III family protein similar to RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana] GI:6102610; contains Pfam profiles PF02170: PAZ domain, PF00636: RNase3 domain Length = 1531 Score = 32.3 bits (70), Expect = 0.35 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 449 SRKCQTVLENGTLVPSKLTSPGQLATFP 532 SRK Q + NG P + T+PGQ + FP Sbjct: 1022 SRKLQGYIRNGAFEPRRWTAPGQFSLFP 1049 >At5g54050.1 68418.m06722 DC1 domain-containing protein Length = 580 Score = 31.5 bits (68), Expect = 0.62 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = +1 Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354 V D LE +VP+E EEIK P + G H HE Sbjct: 268 VWDGLELEDVPEEEEEIKDPFKVINEKGDIVHFSHE 303 >At5g29624.1 68418.m03640 DC1 domain-containing protein contains Pfam PF03107: DC1 domain Length = 488 Score = 31.5 bits (68), Expect = 0.62 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = +1 Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354 V D L+ +VPDE EEIK P + G H HE Sbjct: 256 VWDGLDLEDVPDEEEEIKDPFKVINENGDIVHISHE 291 >At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 452 Score = 31.5 bits (68), Expect = 0.62 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +1 Query: 355 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 492 T P HH D + VS +K+++ T + ++ FQ V D G+W RT Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64 >At5g65910.1 68418.m08296 BSD domain-containing protein contains Pfam profile PF03909: BSD domain Length = 432 Score = 31.1 bits (67), Expect = 0.82 Identities = 13/52 (25%), Positives = 23/52 (44%) Frame = +1 Query: 316 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 471 L P + Q P+H E+ E +++ +KND R G ++S + Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115 >At3g61390.2 68416.m06872 U-box domain-containing protein several hypothetical proteins - Arabidopsis thaliana Length = 435 Score = 31.1 bits (67), Expect = 0.82 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Frame = +1 Query: 274 VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 450 + +E EE+K L ++ G + +E T N H E + + + +DI GF Sbjct: 319 IREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAADGF 376 Query: 451 QEVSDGIGKWYAR 489 + I +W+ R Sbjct: 377 TYEGEAISRWFER 389 >At5g60800.1 68418.m07628 heavy-metal-associated domain-containing protein similar to farnesylated protein ATFP3 [GI:4097547]; contains Pfam profile PF00403: Heavy-metal-associated domain Length = 283 Score = 30.7 bits (66), Expect = 1.1 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = +1 Query: 259 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIN 420 L+ V++ ++ EE + VDL +P P + +E E +N ++ ED +K K D N Sbjct: 71 LDPVKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPDNN 123 >At5g54030.1 68418.m06720 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 419 Score = 29.9 bits (64), Expect = 1.9 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +1 Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354 V D LE +VP+E EEI+ P + + G H HE Sbjct: 246 VWDGLELEDVPEEEEEIEDPFKVINDKGDIIHFSHE 281 >At1g12380.1 68414.m01431 expressed protein Length = 793 Score = 29.9 bits (64), Expect = 1.9 Identities = 18/71 (25%), Positives = 36/71 (50%) Frame = +1 Query: 304 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 483 PL +R+ + +PE +D +K+++ + + + A IAL + + ++G+ Y Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667 Query: 484 ARTEQINEPRP 516 AR Q+ E P Sbjct: 668 ARAVQMKERDP 678 >At5g54040.1 68418.m06721 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 596 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354 V D LE +VP+E EEI+ P + G H HE Sbjct: 261 VWDGLELEDVPEEEEEIEDPFKVINEKGDIIHFSHE 296 >At5g44770.1 68418.m05487 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 541 Score = 28.7 bits (61), Expect = 4.4 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354 V D +E +VP+E+EE++ P + G H HE Sbjct: 228 VWDGIELEDVPEEDEELEDPFKVINEKGDIVHFSHE 263 >At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) identical to cDNA tubulin folding cofactor A, GI:20514256, SP|O04350 Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin cofactor A homolog) {Arabidopsis thaliana} Length = 113 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +1 Query: 274 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 429 +PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T + Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112 >At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC) family protein similar to SMC1 protein [Bos taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC protein) [Xenopus laevis] GI:3328231; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 1257 Score = 28.3 bits (60), Expect = 5.8 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%) Frame = +2 Query: 56 RTSIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDID------NSLRANKKEVVDIPV 217 + SI DK+P+ E + N++E + + + +A ++D N L E+VD Sbjct: 744 KKSIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIY 803 Query: 218 KVIVEEI-KPSLKMI*KT-LKCRMKMRKSR 301 K + + P++++ +T LK K + R Sbjct: 804 KDFSQSVGVPNIRVYEETQLKTAEKEAEER 833 >At3g28600.1 68416.m03570 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 475 Score = 28.3 bits (60), Expect = 5.8 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 65 IPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKK 196 I + E + P +V ENL + ID ++KD+ +L KK Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448 >At5g54020.1 68418.m06719 expressed protein Length = 556 Score = 27.9 bits (59), Expect = 7.6 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 247 VEDDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 354 V D LE +VP+E EEI+ P + G H HE Sbjct: 238 VWDGLELEDVPEEEEEIEDPFKVVNEKGDIVHFCHE 273 >At3g17090.1 68416.m02180 protein phosphatase 2C family protein / PP2C family protein similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to protein phosphatase 2C (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain; Length = 384 Score = 27.9 bits (59), Expect = 7.6 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +3 Query: 621 ETQNKASFETIESGLKSLETNFNSGLNQLSEGIPIVAT 734 ETQ + ETIE + E F S +++L + IP +AT Sbjct: 114 ETQGVVTRETIERAFHATEEGFASIVSELWQEIPNLAT 151 >At2g40435.1 68415.m04988 expressed protein Length = 158 Score = 27.9 bits (59), Expect = 7.6 Identities = 25/99 (25%), Positives = 41/99 (41%) Frame = +3 Query: 453 GSVRRYWKMVRSYRAN*RAQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQN 632 GS++ ++++RS N A+ + IQKL + + T S E T Sbjct: 9 GSLQEKFQLLRSI-TNSHAENDTSIIMDA-SKYIQKLKQKVERFNQDPTAEQSSSEPTDP 66 Query: 633 KASFETIESGLKSLETNFNSGLNQLSEGIPIVATFKADG 749 K T+E+ K N SG NQ + ++ F+ G Sbjct: 67 KTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIG 105 >At2g28590.1 68415.m03474 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 424 Score = 27.9 bits (59), Expect = 7.6 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = +2 Query: 335 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSPG 514 R+ KS K TTK F P K+T+ + + S C V G + +T Sbjct: 6 RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63 Query: 515 QLA 523 QLA Sbjct: 64 QLA 66 >At1g33060.2 68414.m04076 no apical meristem (NAM) family protein similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago truncatula) Length = 652 Score = 27.9 bits (59), Expect = 7.6 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -3 Query: 567 HSTFVFERRNF-LGNVASWPGLVNLLGTSVPF 475 H+ +R++F L N+ WPG LL T PF Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375 >At1g33060.1 68414.m04075 no apical meristem (NAM) family protein similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago truncatula) Length = 648 Score = 27.9 bits (59), Expect = 7.6 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -3 Query: 567 HSTFVFERRNF-LGNVASWPGLVNLLGTSVPF 475 H+ +R++F L N+ WPG LL T PF Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375 >At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like transposon protein GB:AAB95292 GI:2088658 from [Arabidopsis thaliana] Length = 1148 Score = 27.9 bits (59), Expect = 7.6 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +1 Query: 244 VVEDDLENVEVPDENEE-IKRPLVDLRNPGPPQHQEHETQNPEHHEDAEK 390 V + ++EN+ PD++EE I +V+L N +H+ HE+ + D ++ Sbjct: 448 VFQSEVENLAYPDKHEESIAFGMVNLSNES-SRHESHESSFSDQLGDMDQ 496 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,741,108 Number of Sequences: 28952 Number of extensions: 270467 Number of successful extensions: 1121 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1065 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1120 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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