BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20977 (708 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 27 2.0 SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 26 4.6 SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 26 6.1 SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 25 8.0 >SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosaccharomyces pombe|chr 1|||Manual Length = 526 Score = 27.5 bits (58), Expect = 2.0 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +2 Query: 140 QTKRNMDRNNMRSSYVNSGTRSLPHMGKRHNSSH 241 + K MD N + Y++ GT +L R+++SH Sbjct: 105 ELKYAMDHNGLNPLYISFGTNALFERNARYSTSH 138 >SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 488 Score = 26.2 bits (55), Expect = 4.6 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -3 Query: 541 AHHSSRLNGLKWQGDEVSSRHGSTSPHHHHV 449 A H +R+ L W +SS S + HHH V Sbjct: 260 AGHQARVGCLSWNRHVLSSGSRSGAIHHHDV 290 >SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 787 Score = 25.8 bits (54), Expect = 6.1 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -3 Query: 523 LNGLKWQGDEVSSRHGS 473 L L+WQGDEV S G+ Sbjct: 751 LKKLRWQGDEVDSTDGN 767 >SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 447 Score = 25.4 bits (53), Expect = 8.0 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -3 Query: 565 LLRLWV*RAHHSSRLNGLKWQGDEVSSRHGSTSPHH 458 L R+W R S+ LKWQ + + S G+ + +H Sbjct: 353 LARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYH 388 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,311,292 Number of Sequences: 5004 Number of extensions: 39109 Number of successful extensions: 83 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 82 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 329179816 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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