Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20977
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    27   2.0  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   4.6  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   6.1  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   8.0  

>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 QTKRNMDRNNMRSSYVNSGTRSLPHMGKRHNSSH 241
           + K  MD N +   Y++ GT +L     R+++SH
Sbjct: 105 ELKYAMDHNGLNPLYISFGTNALFERNARYSTSH 138


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 541 AHHSSRLNGLKWQGDEVSSRHGSTSPHHHHV 449
           A H +R+  L W    +SS   S + HHH V
Sbjct: 260 AGHQARVGCLSWNRHVLSSGSRSGAIHHHDV 290


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 523 LNGLKWQGDEVSSRHGS 473
           L  L+WQGDEV S  G+
Sbjct: 751 LKKLRWQGDEVDSTDGN 767


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 565 LLRLWV*RAHHSSRLNGLKWQGDEVSSRHGSTSPHH 458
           L R+W  R    S+   LKWQ + + S  G+ + +H
Sbjct: 353 LARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYH 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,292
Number of Sequences: 5004
Number of extensions: 39109
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)