Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20977
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    31   1.2  
08_01_0802 - 7754561-7755628                                           29   4.8  

>09_04_0501 + 18153252-18153453,18153973-18154224,18154809-18155015,
            18155198-18157046,18157334-18157381,18158222-18158291,
            18158380-18158475,18158583-18158621,18158714-18158924,
            18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 137  PQTKRNMDRNNMRSSYVNSGTRSLPHMGKRHNSSHS 244
            P T  N +    + + +  GT  LPH  KRH S +S
Sbjct: 1086 PSTSANNENMGHQLTMLGGGTEELPHPTKRHKSGNS 1121


>08_01_0802 - 7754561-7755628
          Length = 355

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = +1

Query: 400 LINYIYDSWNKVTRDLERGDDEAKYYHDVMTPRHLATSG-----HSILMSGGRVRPTIAT 564
           L+ +IY  W    RDLE  D+     H ++     A         SIL    RV   +AT
Sbjct: 249 LLQFIYTDWLPSIRDLEGDDNSEMIRHLLVAADRYAVDRLKLLCQSILCKNLRV-GNVAT 307

Query: 565 SIGLSSIYH*GVFILSTFEILLMWHTKSDV 654
           ++ L+  +H G+   +  E +   +   DV
Sbjct: 308 TLALADQHHCGMLKDACIEFMSCPNMLDDV 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,649,573
Number of Sequences: 37544
Number of extensions: 249978
Number of successful extensions: 673
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)