Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20977
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)       31   0.69 
SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_45435| Best HMM Match : Transposase_8 (HMM E-Value=4.6e-27)         28   6.5  
SB_39081| Best HMM Match : Pertussis_S2S3 (HMM E-Value=9.8)            28   6.5  
SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)                   28   6.5  
SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)
          Length = 268

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 499 DEVSSRHGSTSPHHHHVLDHGSPYSMNHKC 410
           D V   H  TS HH+  LDHG+ Y    +C
Sbjct: 18  DPVPMSHHVTSNHHYTCLDHGTRYKTFEQC 47


>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 442 DLERGDDEAKYYHDVMTPRHLATSGH---SILMSGGRVRPTIATSIG 573
           D+E GDD  + + D++T RHL  SG    ++++     +P +A  +G
Sbjct: 118 DIE-GDDPWQLWKDMVTSRHLTPSGKQEVNLILDALSYKPIVAAGVG 163


>SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 750

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 424 WNKVTRDLERGDDEAKYYHDVMTPRHL 504
           W++ +R  ERG  +AK Y ++ TPR +
Sbjct: 633 WSRESRQTERGIHQAKAYIEMKTPRQI 659


>SB_45435| Best HMM Match : Transposase_8 (HMM E-Value=4.6e-27)
          Length = 205

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 526 RLNGLKWQGDEVSSRHGSTSPHHHHVLDHGSPYSMNHKCN 407
           RL+G   Q + V  R  S SP    V + G P   NHK N
Sbjct: 10  RLDGFPVQMNAVHIRFDSNSPVMADVQEEGKPQLWNHKQN 49


>SB_39081| Best HMM Match : Pertussis_S2S3 (HMM E-Value=9.8)
          Length = 178

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHH 455
           HH S     +     ++ RH S SPHHH
Sbjct: 28  HHPSSSTKNQPSSSTIAKRHHSLSPHHH 55


>SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)
          Length = 551

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 265 DRYGMTMAVTAVVTFAHVWQRTGTAV---YIT*SHIVAIHVS-FSLRSSKKTIYN 113
           D+Y +T   TA +T    W R G +V    +T +     HV  F++ SS+KTIY+
Sbjct: 388 DKYCVTWNKTARMTLDGGWTRRGCSVSSTNLTHTECECDHVGMFAVVSSEKTIYS 442


>SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 397 DLINYIYDSWNKVTRDLERGDDEAKYYHDVM-TPRHLATSGHSILMSGGRVRPTIATS-- 567
           DL+NY+  + +K   DL + +DE     D M TP+ L +  + I  + G V P I  S  
Sbjct: 258 DLLNYLRRNRSKRYVDLHKQNDETGEQEDEMITPQDLLSFSYQI--AAGMVVPHIRPSPL 315

Query: 568 IGLSSIY 588
           +  SS Y
Sbjct: 316 VTYSSCY 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,450
Number of Sequences: 59808
Number of extensions: 300830
Number of successful extensions: 930
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)