BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20977 (708 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11) 31 0.69 SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8 SB_45435| Best HMM Match : Transposase_8 (HMM E-Value=4.6e-27) 28 6.5 SB_39081| Best HMM Match : Pertussis_S2S3 (HMM E-Value=9.8) 28 6.5 SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31) 28 6.5 SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5 >SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11) Length = 268 Score = 31.5 bits (68), Expect = 0.69 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 499 DEVSSRHGSTSPHHHHVLDHGSPYSMNHKC 410 D V H TS HH+ LDHG+ Y +C Sbjct: 18 DPVPMSHHVTSNHHYTCLDHGTRYKTFEQC 47 >SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 548 Score = 29.9 bits (64), Expect = 2.1 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = +1 Query: 442 DLERGDDEAKYYHDVMTPRHLATSGH---SILMSGGRVRPTIATSIG 573 D+E GDD + + D++T RHL SG ++++ +P +A +G Sbjct: 118 DIE-GDDPWQLWKDMVTSRHLTPSGKQEVNLILDALSYKPIVAAGVG 163 >SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 750 Score = 29.5 bits (63), Expect = 2.8 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 424 WNKVTRDLERGDDEAKYYHDVMTPRHL 504 W++ +R ERG +AK Y ++ TPR + Sbjct: 633 WSRESRQTERGIHQAKAYIEMKTPRQI 659 >SB_45435| Best HMM Match : Transposase_8 (HMM E-Value=4.6e-27) Length = 205 Score = 28.3 bits (60), Expect = 6.5 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -3 Query: 526 RLNGLKWQGDEVSSRHGSTSPHHHHVLDHGSPYSMNHKCN 407 RL+G Q + V R S SP V + G P NHK N Sbjct: 10 RLDGFPVQMNAVHIRFDSNSPVMADVQEEGKPQLWNHKQN 49 >SB_39081| Best HMM Match : Pertussis_S2S3 (HMM E-Value=9.8) Length = 178 Score = 28.3 bits (60), Expect = 6.5 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = -3 Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHH 455 HH S + ++ RH S SPHHH Sbjct: 28 HHPSSSTKNQPSSSTIAKRHHSLSPHHH 55 >SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31) Length = 551 Score = 28.3 bits (60), Expect = 6.5 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Frame = -3 Query: 265 DRYGMTMAVTAVVTFAHVWQRTGTAV---YIT*SHIVAIHVS-FSLRSSKKTIYN 113 D+Y +T TA +T W R G +V +T + HV F++ SS+KTIY+ Sbjct: 388 DKYCVTWNKTARMTLDGGWTRRGCSVSSTNLTHTECECDHVGMFAVVSSEKTIYS 442 >SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 382 Score = 28.3 bits (60), Expect = 6.5 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = +1 Query: 397 DLINYIYDSWNKVTRDLERGDDEAKYYHDVM-TPRHLATSGHSILMSGGRVRPTIATS-- 567 DL+NY+ + +K DL + +DE D M TP+ L + + I + G V P I S Sbjct: 258 DLLNYLRRNRSKRYVDLHKQNDETGEQEDEMITPQDLLSFSYQI--AAGMVVPHIRPSPL 315 Query: 568 IGLSSIY 588 + SS Y Sbjct: 316 VTYSSCY 322 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,427,450 Number of Sequences: 59808 Number of extensions: 300830 Number of successful extensions: 930 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 812 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 924 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1865706635 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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