BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20977 (708 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BT011377-1|AAR96169.1| 958|Drosophila melanogaster LP10202p pro... 29 4.7 AE014297-1897|AAS65152.1| 959|Drosophila melanogaster CG3563-PB... 29 4.7 AE014297-1893|AAF55097.2| 1153|Drosophila melanogaster CG3563-PA... 29 4.7 AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p pro... 25 5.2 AF097636-1|AAF63187.1| 1368|Drosophila melanogaster bicoid-inter... 25 5.2 AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,... 25 5.2 AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,... 25 5.2 BT004890-1|AAO47868.1| 824|Drosophila melanogaster RE52324p pro... 25 5.5 AF273707-1|AAL35409.1| 879|Drosophila melanogaster PFTAIRE-inte... 29 6.2 AE014297-819|AAO41521.1| 1308|Drosophila melanogaster CG33719-PB... 29 6.2 AE014297-816|AAO41518.1| 879|Drosophila melanogaster CG33719-PA... 29 6.2 AE014134-2919|AAF53661.1| 446|Drosophila melanogaster CG15157-P... 29 6.2 >BT011377-1|AAR96169.1| 958|Drosophila melanogaster LP10202p protein. Length = 958 Score = 29.5 bits (63), Expect = 4.7 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%) Frame = -3 Query: 478 GSTSPHH--HHVLDHGSPYSMNH 416 G+T PHH HH L H +PYS ++ Sbjct: 36 GATYPHHLHHHHLSHHTPYSNSY 58 >AE014297-1897|AAS65152.1| 959|Drosophila melanogaster CG3563-PB, isoform B protein. Length = 959 Score = 29.5 bits (63), Expect = 4.7 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%) Frame = -3 Query: 478 GSTSPHH--HHVLDHGSPYSMNH 416 G+T PHH HH L H +PYS ++ Sbjct: 36 GATYPHHLHHHHLSHHTPYSNSY 58 >AE014297-1893|AAF55097.2| 1153|Drosophila melanogaster CG3563-PA, isoform A protein. Length = 1153 Score = 29.5 bits (63), Expect = 4.7 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%) Frame = -3 Query: 478 GSTSPHH--HHVLDHGSPYSMNH 416 G+T PHH HH L H +PYS ++ Sbjct: 230 GATYPHHLHHHHLSHHTPYSNSY 252 >AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p protein. Length = 1367 Score = 24.6 bits (51), Expect(2) = 5.2 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -3 Query: 463 HHHHVLDHGSPYSMNHKC 410 HHHHVL G+ + NH C Sbjct: 208 HHHHVLCAGN--NANHTC 223 Score = 23.0 bits (47), Expect(2) = 5.2 Identities = 8/29 (27%), Positives = 11/29 (37%) Frame = -3 Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHHH 452 HH + G + H + HHHH Sbjct: 150 HHGNAGTAHHGGGGGAGAHHAAAGGHHHH 178 >AF097636-1|AAF63187.1| 1368|Drosophila melanogaster bicoid-interacting protein BIN3 protein. Length = 1368 Score = 24.6 bits (51), Expect(2) = 5.2 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -3 Query: 463 HHHHVLDHGSPYSMNHKC 410 HHHHVL G+ + NH C Sbjct: 208 HHHHVLCAGN--NANHTC 223 Score = 23.0 bits (47), Expect(2) = 5.2 Identities = 8/29 (27%), Positives = 11/29 (37%) Frame = -3 Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHHH 452 HH + G + H + HHHH Sbjct: 150 HHGNAGTAHHGGGGGAGAHHAAAGGHHHH 178 >AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB, isoform B protein. Length = 1367 Score = 24.6 bits (51), Expect(2) = 5.2 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -3 Query: 463 HHHHVLDHGSPYSMNHKC 410 HHHHVL G+ + NH C Sbjct: 208 HHHHVLCAGN--NANHTC 223 Score = 23.0 bits (47), Expect(2) = 5.2 Identities = 8/29 (27%), Positives = 11/29 (37%) Frame = -3 Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHHH 452 HH + G + H + HHHH Sbjct: 150 HHGNAGTAHHGGGGGAGAHHAAAGGHHHH 178 >AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA, isoform A protein. Length = 1367 Score = 24.6 bits (51), Expect(2) = 5.2 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -3 Query: 463 HHHHVLDHGSPYSMNHKC 410 HHHHVL G+ + NH C Sbjct: 208 HHHHVLCAGN--NANHTC 223 Score = 23.0 bits (47), Expect(2) = 5.2 Identities = 8/29 (27%), Positives = 11/29 (37%) Frame = -3 Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHHH 452 HH + G + H + HHHH Sbjct: 150 HHGNAGTAHHGGGGGAGAHHAAAGGHHHH 178 >BT004890-1|AAO47868.1| 824|Drosophila melanogaster RE52324p protein. Length = 824 Score = 24.6 bits (51), Expect(2) = 5.5 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -3 Query: 463 HHHHVLDHGSPYSMNHKC 410 HHHHVL G+ + NH C Sbjct: 208 HHHHVLCAGN--NANHTC 223 Score = 23.0 bits (47), Expect(2) = 5.5 Identities = 8/29 (27%), Positives = 11/29 (37%) Frame = -3 Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHHH 452 HH + G + H + HHHH Sbjct: 150 HHGNAGTAHHGGGGGAGAHHAAAGGHHHH 178 >AF273707-1|AAL35409.1| 879|Drosophila melanogaster PFTAIRE-interacting factor 1A protein. Length = 879 Score = 29.1 bits (62), Expect = 6.2 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 194 GTRSLPHMGKRHNSSHSHSH 253 G ++ KRHNS+HSHSH Sbjct: 263 GDQNRTETPKRHNSTHSHSH 282 >AE014297-819|AAO41521.1| 1308|Drosophila melanogaster CG33719-PB, isoform B protein. Length = 1308 Score = 29.1 bits (62), Expect = 6.2 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 194 GTRSLPHMGKRHNSSHSHSH 253 G ++ KRHNS+HSHSH Sbjct: 263 GDQNRTETPKRHNSTHSHSH 282 >AE014297-816|AAO41518.1| 879|Drosophila melanogaster CG33719-PA, isoform A protein. Length = 879 Score = 29.1 bits (62), Expect = 6.2 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 194 GTRSLPHMGKRHNSSHSHSH 253 G ++ KRHNS+HSHSH Sbjct: 263 GDQNRTETPKRHNSTHSHSH 282 >AE014134-2919|AAF53661.1| 446|Drosophila melanogaster CG15157-PA protein. Length = 446 Score = 29.1 bits (62), Expect = 6.2 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -3 Query: 502 GDEVSSRHGSTSPHHHHVLDHGSPYSMNH 416 G + R TS HH H L H P++ +H Sbjct: 351 GHGLKERESQTSLHHPHTLPHPHPHTHSH 379 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,014,129 Number of Sequences: 53049 Number of extensions: 449286 Number of successful extensions: 2972 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2910 length of database: 24,988,368 effective HSP length: 83 effective length of database: 20,585,301 effective search space used: 3128965752 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -