BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20977 (708 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 30 1.9 Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 30 1.9 AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 30 1.9 AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 30 1.9 U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 28 5.7 U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 28 5.7 AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 5.7 Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical pr... 27 9.9 U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein ... 27 9.9 AB259784-1|BAF48662.1| 323|Caenorhabditis elegans ROG-1 protein. 27 9.9 >Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical protein C12C8.3b protein. Length = 1143 Score = 29.9 bits (64), Expect = 1.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -3 Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440 + G +GD +S G SP+HHH +H Sbjct: 39 MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66 >Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical protein C12C8.3a protein. Length = 1147 Score = 29.9 bits (64), Expect = 1.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -3 Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440 + G +GD +S G SP+HHH +H Sbjct: 39 MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66 >AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. Length = 1147 Score = 29.9 bits (64), Expect = 1.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -3 Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440 + G +GD +S G SP+HHH +H Sbjct: 39 MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66 >AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. Length = 1143 Score = 29.9 bits (64), Expect = 1.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -3 Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440 + G +GD +S G SP+HHH +H Sbjct: 39 MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66 >U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical protein F41G3.3 protein. Length = 577 Score = 28.3 bits (60), Expect = 5.7 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = -3 Query: 499 DEVSSRHGSTSPHHHHVLDHGSPY 428 ++ +++ +T PHHHH H P+ Sbjct: 70 EDYGNQYANTVPHHHHPHPHAHPH 93 >U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein 171 protein. Length = 307 Score = 28.3 bits (60), Expect = 5.7 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -1 Query: 618 KSTEYENASVVY*TKTDACCDCGSDA 541 + TEYEN V + CC CG+ A Sbjct: 94 RQTEYENLGVEGSSSQGGCCGCGTSA 119 >AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical protein Y39B6A.1 protein. Length = 735 Score = 28.3 bits (60), Expect = 5.7 Identities = 14/55 (25%), Positives = 22/55 (40%) Frame = -3 Query: 541 AHHSSRLNGLKWQGDEVSSRHGSTSPHHHHVLDHGSPYSMNHKCN**DHHAEYSD 377 +HHS +G + + HG H H + HG S H + HH + + Sbjct: 554 SHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGE 608 Score = 27.9 bits (59), Expect = 7.5 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = -3 Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHHHVLDHGSPYSMNHKCN**DHH 392 HH+ +G + + HG H H HGS +S H + +HH Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHH 510 >Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical protein R10H10.2 protein. Length = 570 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +2 Query: 536 VGASDPQSQQASVLVQYTTEAFSYSVLLRFY*CGTQNQMW 655 +GA P+S Q ++LV +TT+ Y + L T W Sbjct: 43 LGALSPRSMQKNILVPFTTQTVKYLLGLEKVSDSTDEMGW 82 >U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein protein. Length = 570 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +2 Query: 536 VGASDPQSQQASVLVQYTTEAFSYSVLLRFY*CGTQNQMW 655 +GA P+S Q ++LV +TT+ Y + L T W Sbjct: 43 LGALSPRSMQKNILVPFTTQTVKYLLGLEKVSDSTDEMGW 82 >AB259784-1|BAF48662.1| 323|Caenorhabditis elegans ROG-1 protein. Length = 323 Score = 27.5 bits (58), Expect = 9.9 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -3 Query: 490 SSRHGSTSPHHHHVLDHGSPYSMNH 416 SS +G S HHHH L H S +++N+ Sbjct: 274 SSSYGYPSSHHHH-LPHDSFHALNN 297 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,761,932 Number of Sequences: 27780 Number of extensions: 218976 Number of successful extensions: 603 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 550 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 594 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1645110168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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