Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20977
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 30 1.9
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 30 1.9
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 28 5.7
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 28 5.7
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 5.7
Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical pr... 27 9.9
U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein ... 27 9.9
AB259784-1|BAF48662.1| 323|Caenorhabditis elegans ROG-1 protein. 27 9.9
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440
+ G +GD +S G SP+HHH +H
Sbjct: 39 MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440
+ G +GD +S G SP+HHH +H
Sbjct: 39 MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440
+ G +GD +S G SP+HHH +H
Sbjct: 39 MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440
+ G +GD +S G SP+HHH +H
Sbjct: 39 MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 499 DEVSSRHGSTSPHHHHVLDHGSPY 428
++ +++ +T PHHHH H P+
Sbjct: 70 EDYGNQYANTVPHHHHPHPHAHPH 93
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 618 KSTEYENASVVY*TKTDACCDCGSDA 541
+ TEYEN V + CC CG+ A
Sbjct: 94 RQTEYENLGVEGSSSQGGCCGCGTSA 119
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = -3
Query: 541 AHHSSRLNGLKWQGDEVSSRHGSTSPHHHHVLDHGSPYSMNHKCN**DHHAEYSD 377
+HHS +G + + HG H H + HG S H + HH + +
Sbjct: 554 SHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGE 608
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -3
Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHHHVLDHGSPYSMNHKCN**DHH 392
HH+ +G + + HG H H HGS +S H + +HH
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHH 510
>Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical
protein R10H10.2 protein.
Length = 570
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 536 VGASDPQSQQASVLVQYTTEAFSYSVLLRFY*CGTQNQMW 655
+GA P+S Q ++LV +TT+ Y + L T W
Sbjct: 43 LGALSPRSMQKNILVPFTTQTVKYLLGLEKVSDSTDEMGW 82
>U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein
protein.
Length = 570
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 536 VGASDPQSQQASVLVQYTTEAFSYSVLLRFY*CGTQNQMW 655
+GA P+S Q ++LV +TT+ Y + L T W
Sbjct: 43 LGALSPRSMQKNILVPFTTQTVKYLLGLEKVSDSTDEMGW 82
>AB259784-1|BAF48662.1| 323|Caenorhabditis elegans ROG-1 protein.
Length = 323
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 490 SSRHGSTSPHHHHVLDHGSPYSMNH 416
SS +G S HHHH L H S +++N+
Sbjct: 274 SSSYGYPSSHHHH-LPHDSFHALNN 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,932
Number of Sequences: 27780
Number of extensions: 218976
Number of successful extensions: 603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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