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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20977
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    30   1.9  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    30   1.9  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    28   5.7  
U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protei...    28   5.7  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z70686-2|CAA94610.1|  570|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U20142-2|AAB60235.1|  570|Caenorhabditis elegans SPE-26 protein ...    27   9.9  
AB259784-1|BAF48662.1|  323|Caenorhabditis elegans ROG-1 protein.      27   9.9  

>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440
           + G   +GD +S   G  SP+HHH  +H
Sbjct: 39  MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440
           + G   +GD +S   G  SP+HHH  +H
Sbjct: 39  MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440
           + G   +GD +S   G  SP+HHH  +H
Sbjct: 39  MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 523 LNGLKWQGDEVSSRHGSTSPHHHHVLDH 440
           + G   +GD +S   G  SP+HHH  +H
Sbjct: 39  MGGSSSEGDSMSHHRGEHSPNHHHQDNH 66


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 499 DEVSSRHGSTSPHHHHVLDHGSPY 428
           ++  +++ +T PHHHH   H  P+
Sbjct: 70  EDYGNQYANTVPHHHHPHPHAHPH 93


>U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protein
           171 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 618 KSTEYENASVVY*TKTDACCDCGSDA 541
           + TEYEN  V   +    CC CG+ A
Sbjct: 94  RQTEYENLGVEGSSSQGGCCGCGTSA 119


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -3

Query: 541 AHHSSRLNGLKWQGDEVSSRHGSTSPHHHHVLDHGSPYSMNHKCN**DHHAEYSD 377
           +HHS   +G   +     + HG    H  H + HG   S  H  +   HH  + +
Sbjct: 554 SHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGE 608



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 538 HHSSRLNGLKWQGDEVSSRHGSTSPHHHHVLDHGSPYSMNHKCN**DHH 392
           HH+   +G   +     + HG    H  H   HGS +S  H  +  +HH
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHH 510


>Z70686-2|CAA94610.1|  570|Caenorhabditis elegans Hypothetical
           protein R10H10.2 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 536 VGASDPQSQQASVLVQYTTEAFSYSVLLRFY*CGTQNQMW 655
           +GA  P+S Q ++LV +TT+   Y + L      T    W
Sbjct: 43  LGALSPRSMQKNILVPFTTQTVKYLLGLEKVSDSTDEMGW 82


>U20142-2|AAB60235.1|  570|Caenorhabditis elegans SPE-26 protein
           protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 536 VGASDPQSQQASVLVQYTTEAFSYSVLLRFY*CGTQNQMW 655
           +GA  P+S Q ++LV +TT+   Y + L      T    W
Sbjct: 43  LGALSPRSMQKNILVPFTTQTVKYLLGLEKVSDSTDEMGW 82


>AB259784-1|BAF48662.1|  323|Caenorhabditis elegans ROG-1 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 490 SSRHGSTSPHHHHVLDHGSPYSMNH 416
           SS +G  S HHHH L H S +++N+
Sbjct: 274 SSSYGYPSSHHHH-LPHDSFHALNN 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,932
Number of Sequences: 27780
Number of extensions: 218976
Number of successful extensions: 603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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