Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20977
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ...    30   1.3  
At4g25760.1 68417.m03708 expressed protein                             29   4.0  
At1g73160.1 68414.m08462 glycosyl transferase family 1 protein c...    28   7.0  

>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 491

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 505 QGDEVSSRHGSTSPHHHHVLDHGSPYSMNHK 413
           QGD+ +S+    S HHHH  D  + Y  +H+
Sbjct: 458 QGDDHNSQREGMSRHHHHHQDPSTMYHHHHQ 488


>At4g25760.1 68417.m03708 expressed protein
          Length = 129

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 439 RDLERGDDEAKYYHDVMTPRHLATSGHSILMSGGRVRPT 555
           RDLE GDD AK  +D    +H       +++  G VRPT
Sbjct: 66  RDLEAGDD-AKPDNDTNKTKHTEMPEKFLVIMAGDVRPT 103


>At1g73160.1 68414.m08462 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 486

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 481 HGSTSPHHHHVLDHGSPYSMNHKCN**DHHA 389
           H   +P+ H  L+H   + + HK N  DHH+
Sbjct: 140 HVYFAPNEHGSLNHSRAFEIFHKINSLDHHS 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,059
Number of Sequences: 28952
Number of extensions: 203071
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)