BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20976 (730 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.54 03_06_0422 + 33818887-33819996 31 0.94 12_01_0686 - 5855216-5858263 31 1.2 05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 31 1.2 07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 1.6 07_03_1191 + 24690936-24691029,24691184-24691377 29 3.8 11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 6.6 06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 28 6.6 02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 6.6 12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 28 8.7 02_01_0775 + 5775949-5777385 28 8.7 >03_02_0994 - 13067254-13067379,13067483-13067521,13067824-13067893, 13068025-13068116,13068237-13068319,13068590-13068633, 13068682-13068800,13068883-13068915,13069152-13069239, 13069364-13069413 Length = 247 Score = 31.9 bits (69), Expect = 0.54 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +2 Query: 83 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 211 VC T++P +QVC+ +C G CS+ + D C LC Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92 >03_06_0422 + 33818887-33819996 Length = 369 Score = 31.1 bits (67), Expect = 0.94 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = -1 Query: 469 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 299 E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206 >12_01_0686 - 5855216-5858263 Length = 1015 Score = 30.7 bits (66), Expect = 1.2 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +1 Query: 142 WCDHLQQYPPIHRWYLLSLHSSLQCGP-SRPHRSLRTLTCCQIHWCWCSDS 291 WCDH+ +Y P + +LSL GP ++R+LT ++H+ S S Sbjct: 233 WCDHIAKYTP--KLQVLSLPYCSLSGPVCASFAAMRSLTTIELHYNLLSGS 281 >05_07_0029 - 27163121-27163818,27163992-27164067,27164184-27165896, 27166285-27166364,27166516-27166684 Length = 911 Score = 30.7 bits (66), Expect = 1.2 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -1 Query: 355 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRSMSLV 239 G D +E+C+ GT+ + RC+ TN FG S +L+ Sbjct: 684 GFRDRRRSENCTMQQDGTNKRNSRCSETN-FGQDSSNLI 721 >07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 Length = 106 Score = 30.3 bits (65), Expect = 1.6 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 83 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 184 +CRQ + C CH++ LC G + S P T G Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70 >07_03_1191 + 24690936-24691029,24691184-24691377 Length = 95 Score = 29.1 bits (62), Expect = 3.8 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +2 Query: 83 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 193 VC++T+ C+Q CH + L G T S + D CC Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75 >11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659, 5392314-5392377 Length = 514 Score = 28.3 bits (60), Expect = 6.6 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -1 Query: 478 NSLESEEQQERHHKTEQTHSLRQ 410 NS+ E QE+ H E+TH LRQ Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84 >06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 Length = 974 Score = 28.3 bits (60), Expect = 6.6 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%) Frame = -1 Query: 505 MAVVVFLK-VNSLESEEQQERHHKTEQTHS---LRQGETQNGV*EQLLLEGGVPGIADDE 338 +A ++ LK + S ++ ++ EQT + Q T NG E L GG ++ + Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390 Query: 337 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRSMSLVTDVVWKDRTAESCVGT-AGTICVWV 167 GAE S+ + T+ + T T+ G++ + D + K ++ + T T+ Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKNTRNADFMDKAQSLVVLLSTLVATVAYQA 450 Query: 166 GTAASG 149 G G Sbjct: 451 GLVPPG 456 >02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 Length = 213 Score = 28.3 bits (60), Expect = 6.6 Identities = 13/49 (26%), Positives = 25/49 (51%) Frame = -2 Query: 237 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 91 P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56 >12_02_1152 + 26515422-26515460,26516317-26516454,26518647-26518809, 26519165-26519213,26519315-26519390,26520348-26520473 Length = 196 Score = 27.9 bits (59), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 254 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 90 +N+++ RCG HC L + L + H + E G GC DQSG Sbjct: 22 LNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72 >02_01_0775 + 5775949-5777385 Length = 478 Score = 27.9 bits (59), Expect = 8.7 Identities = 13/39 (33%), Positives = 15/39 (38%) Frame = -3 Query: 170 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 54 GG +W Q RV G GC G + CGA Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,504,125 Number of Sequences: 37544 Number of extensions: 458283 Number of successful extensions: 1467 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1466 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1909952136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -