Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20976
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    32   0.54 
03_06_0422 + 33818887-33819996                                         31   0.94 
12_01_0686 - 5855216-5858263                                           31   1.2  
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658...    31   1.2  
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462     30   1.6  
07_03_1191 + 24690936-24691029,24691184-24691377                       29   3.8  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   6.6  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   6.6  
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505     28   6.6  
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188...    28   8.7  
02_01_0775 + 5775949-5777385                                           28   8.7  

>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 83  VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 211
           VC  T++P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 51  VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>03_06_0422 + 33818887-33819996
          Length = 369

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -1

Query: 469 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 299
           E   ++ER  + E+T SL    + N   E ++L+G       D+  +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 142 WCDHLQQYPPIHRWYLLSLHSSLQCGP-SRPHRSLRTLTCCQIHWCWCSDS 291
           WCDH+ +Y P  +  +LSL      GP      ++R+LT  ++H+   S S
Sbjct: 233 WCDHIAKYTP--KLQVLSLPYCSLSGPVCASFAAMRSLTTIELHYNLLSGS 281


>05_07_0029 -
           27163121-27163818,27163992-27164067,27164184-27165896,
           27166285-27166364,27166516-27166684
          Length = 911

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 355 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRSMSLV 239
           G  D   +E+C+    GT+  + RC+ TN FG  S +L+
Sbjct: 684 GFRDRRRSENCTMQQDGTNKRNSRCSETN-FGQDSSNLI 721


>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
          Length = 106

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 83  VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 184
           +CRQ +  C   CH++ LC G  + S   P T G
Sbjct: 38  ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70


>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 83  VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 193
           VC++T+  C+Q  CH + L  G T  S    + D  CC
Sbjct: 38  VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 478 NSLESEEQQERHHKTEQTHSLRQ 410
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
 Frame = -1

Query: 505 MAVVVFLK-VNSLESEEQQERHHKTEQTHS---LRQGETQNGV*EQLLLEGGVPGIADDE 338
           +A ++ LK + S ++      ++  EQT +     Q  T NG  E L   GG   ++ + 
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390

Query: 337 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRSMSLVTDVVWKDRTAESCVGT-AGTICVWV 167
           GAE  S+ +    T+ +    T T+  G++  +   D + K ++    + T   T+    
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKNTRNADFMDKAQSLVVLLSTLVATVAYQA 450

Query: 166 GTAASG 149
           G    G
Sbjct: 451 GLVPPG 456


>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
          Length = 213

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 237 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 91
           P+W G   ++ AV G + P+ +G+   ++  P Q+    + W+    VW
Sbjct: 8   PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56


>12_02_1152 +
           26515422-26515460,26516317-26516454,26518647-26518809,
           26519165-26519213,26519315-26519390,26520348-26520473
          Length = 196

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -3

Query: 254 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 90
           +N+++ RCG    HC  L   +   L       +  H   + E G  GC  DQSG
Sbjct: 22  LNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72


>02_01_0775 + 5775949-5777385
          Length = 478

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -3

Query: 170 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 54
           GG   +W  Q RV   G  GC     G       + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,504,125
Number of Sequences: 37544
Number of extensions: 458283
Number of successful extensions: 1467
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)