BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20976 (730 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10 SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 31 0.72 SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 31 0.96 SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2 SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 29 2.9 SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9 SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9 SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1 SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 5.1 SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 29 5.1 SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 5.1 SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 29 5.1 SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 5.1 SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 5.1 SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 28 6.7 SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 8.9 SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 >SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 744 Score = 63.7 bits (148), Expect = 1e-10 Identities = 30/30 (100%), Positives = 30/30 (100%) Frame = +2 Query: 329 FGSLIIGYARNPSLKQQLFSYAILGFALSE 418 FGSLIIGYARNPSLKQQLFSYAILGFALSE Sbjct: 126 FGSLIIGYARNPSLKQQLFSYAILGFALSE 155 >SB_20479| Best HMM Match : Collagen (HMM E-Value=1) Length = 1214 Score = 31.5 bits (68), Expect = 0.72 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -1 Query: 526 TLKPHM-RMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 392 +L PH +V LK ESEE E H EQ H +Q +T NG Sbjct: 198 SLPPHEPHFELVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242 >SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) Length = 572 Score = 31.1 bits (67), Expect = 0.96 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308 NS ++ PL +VP +T ++PA P S + + S ++ L +S+ L + L+P Sbjct: 79 NSTMILPLTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 137 Query: 309 ELVLEQSSAPSSSAMPGTP 365 + S P ++ + TP Sbjct: 138 S--ISTSILPYNTTVIATP 154 Score = 30.3 bits (65), Expect = 1.7 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284 NS ++ PL +VP +T ++PA P S + + S ++ L +S+ L + Sbjct: 481 NSTMILPLTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 530 Score = 28.7 bits (61), Expect = 5.1 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308 NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P Sbjct: 280 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 338 Query: 309 ELVLEQSSAPSSSAMPGTP 365 + S P ++ + TP Sbjct: 339 S--ISTSILPYNTTVIATP 355 >SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 345 Score = 29.9 bits (64), Expect = 2.2 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +1 Query: 244 RTLTCCQIHWCWCSDSGS 297 R TCCQ H W SDSGS Sbjct: 251 RYFTCCQGHLTWRSDSGS 268 >SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 897 Score = 29.5 bits (63), Expect = 2.9 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = -1 Query: 460 EQQERHHKTEQTH-SLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSN----TSSGTSY 296 ++ E H+T+ T S + E+ + +Q +GG G+ D+E D N + G + Sbjct: 54 DKTEDPHRTQGTEDSSKSPESGHKAADQSYEDGGEYGVPDEEDENDVKNKILVAALGHVH 113 Query: 295 SHCRCTSTNEFGSRSMSL 242 +H +ST G++S+ L Sbjct: 114 THGWTSSTIAAGAQSLGL 131 >SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) Length = 565 Score = 29.5 bits (63), Expect = 2.9 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -3 Query: 260 QQVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 165 Q+ NVLSD GLE CR LC + + C G Sbjct: 79 QRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111 >SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 5834 Score = 29.1 bits (62), Expect = 3.9 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -3 Query: 230 GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 138 G G C +LC+ +++C G G C +W+ C Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423 >SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 917 Score = 29.1 bits (62), Expect = 3.9 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = -3 Query: 230 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 81 G + P E CR + C C +++HQC E+G P S GR+ Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414 >SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1229 Score = 28.7 bits (61), Expect = 5.1 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308 NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P Sbjct: 297 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 355 Query: 309 ELVLEQSSAPSSSAMPGTP 365 + S P ++ + TP Sbjct: 356 S--ISTSILPYNTTVIATP 372 Score = 27.9 bits (59), Expect = 8.9 Identities = 14/51 (27%), Positives = 27/51 (52%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284 NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + Sbjct: 498 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 547 Score = 27.9 bits (59), Expect = 8.9 Identities = 14/51 (27%), Positives = 27/51 (52%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284 NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + Sbjct: 699 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 748 >SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) Length = 737 Score = 28.7 bits (61), Expect = 5.1 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308 NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P Sbjct: 609 NSTMIFPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 667 Query: 309 ELVLEQSSAPSSSAMPGTP 365 + S P ++ + TP Sbjct: 668 S--ISTSILPHNTTVIATP 684 >SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) Length = 186 Score = 28.7 bits (61), Expect = 5.1 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +1 Query: 139 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 252 HW + + PI RW+ L H+SL P+RP+R+ + + Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165 >SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) Length = 1960 Score = 28.7 bits (61), Expect = 5.1 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308 NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P Sbjct: 96 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 154 Query: 309 ELVLEQSSAPSSSAMPGTP 365 + S P ++ + TP Sbjct: 155 S--ISTSILPYNTTVIATP 171 Score = 28.7 bits (61), Expect = 5.1 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308 NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P Sbjct: 297 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 355 Query: 309 ELVLEQSSAPSSSAMPGTP 365 + S P ++ + TP Sbjct: 356 S--ISTSILPYNTTVIATP 372 Score = 28.3 bits (60), Expect = 6.7 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308 NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P Sbjct: 1101 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIP 1159 Query: 309 ELVLEQSSAPSSSAMPGTP 365 + S P ++ + TP Sbjct: 1160 S--ISTSMLPYNTTVIATP 1176 Score = 28.3 bits (60), Expect = 6.7 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284 NS ++ P A+VP +T ++PA P S + + S ++ L +S+ L + Sbjct: 1905 NSNMILPSASVPYNTTLIPA-PNATSTAATKMSPSYVANMTTLDSSVSLTR 1954 >SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) Length = 718 Score = 28.7 bits (61), Expect = 5.1 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = +2 Query: 71 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 229 ++ VC TD+PC + H ++ C T +T P T C T S +PD Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538 >SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) Length = 351 Score = 28.7 bits (61), Expect = 5.1 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +2 Query: 152 TCSSTHPYTDGTCCPYTALCSAV 220 +CSS H DGTC ++ C+ V Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133 >SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) Length = 147 Score = 28.7 bits (61), Expect = 5.1 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +2 Query: 152 TCSSTHPYTDGTCCPYTALCSAV 220 +CSS H DGTC ++ C+ V Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133 >SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) Length = 201 Score = 28.3 bits (60), Expect = 6.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 209 RELCRDSRYHLCMGGYCCKWSHQCR 135 R CR HLC+G C+W Q R Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197 >SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 296 Score = 27.9 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%) Frame = +1 Query: 292 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 372 G +WF SW W + LPH+ + C E LP+ Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294 >SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1315 Score = 27.9 bits (59), Expect = 8.9 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%) Frame = -3 Query: 212 CRELCRDSRYHLCMGGYCCKWSHQC---RVAEDG--RPGCRGDQSG 90 C C Y C+ G C KW C + EDG PG G Q G Sbjct: 1189 CDHKCSKDEYQ-CVSGACVKWPLTCDGKKDCEDGTDEPGICGVQIG 1233 >SB_34777| Best HMM Match : VWA (HMM E-Value=0) Length = 1268 Score = 27.9 bits (59), Expect = 8.9 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = -1 Query: 469 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 329 + + QER +TEQTH QG+ Q +Q ++G G + D+G E Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686 >SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 617 Score = 27.9 bits (59), Expect = 8.9 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 487 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 395 LK E E+QQ +HHK E+ Q E Q+ Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,932,481 Number of Sequences: 59808 Number of extensions: 544618 Number of successful extensions: 2607 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2316 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2603 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1949964354 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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