Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20976
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 31 0.72
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 31 0.96
SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 29 2.9
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 5.1
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 29 5.1
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 5.1
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 29 5.1
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 5.1
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 5.1
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 28 6.7
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 8.9
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = +2
Query: 329 FGSLIIGYARNPSLKQQLFSYAILGFALSE 418
FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 126 FGSLIIGYARNPSLKQQLFSYAILGFALSE 155
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 526 TLKPHM-RMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 392
+L PH +V LK ESEE E H EQ H +Q +T NG
Sbjct: 198 SLPPHEPHFELVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 31.1 bits (67), Expect = 0.96
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
NS ++ PL +VP +T ++PA P S + + S ++ L +S+ L + L+P
Sbjct: 79 NSTMILPLTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 137
Query: 309 ELVLEQSSAPSSSAMPGTP 365
+ S P ++ + TP
Sbjct: 138 S--ISTSILPYNTTVIATP 154
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284
NS ++ PL +VP +T ++PA P S + + S ++ L +S+ L +
Sbjct: 481 NSTMILPLTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 530
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P
Sbjct: 280 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 338
Query: 309 ELVLEQSSAPSSSAMPGTP 365
+ S P ++ + TP
Sbjct: 339 S--ISTSILPYNTTVIATP 355
>SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 244 RTLTCCQIHWCWCSDSGS 297
R TCCQ H W SDSGS
Sbjct: 251 RYFTCCQGHLTWRSDSGS 268
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = -1
Query: 460 EQQERHHKTEQTH-SLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSN----TSSGTSY 296
++ E H+T+ T S + E+ + +Q +GG G+ D+E D N + G +
Sbjct: 54 DKTEDPHRTQGTEDSSKSPESGHKAADQSYEDGGEYGVPDEEDENDVKNKILVAALGHVH 113
Query: 295 SHCRCTSTNEFGSRSMSL 242
+H +ST G++S+ L
Sbjct: 114 THGWTSSTIAAGAQSLGL 131
>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
Length = 565
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 260 QQVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 165
Q+ NVLSD GLE CR LC + + C G
Sbjct: 79 QRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 230 GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 138
G G C +LC+ +++C G G C +W+ C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423
>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 230 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 81
G + P E CR + C C +++HQC E+G P S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P
Sbjct: 297 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 355
Query: 309 ELVLEQSSAPSSSAMPGTP 365
+ S P ++ + TP
Sbjct: 356 S--ISTSILPYNTTVIATP 372
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284
NS ++ P +VP +T ++PA P S + + S ++ L +S+ L +
Sbjct: 498 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 547
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284
NS ++ P +VP +T ++PA P S + + S ++ L +S+ L +
Sbjct: 699 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 748
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P
Sbjct: 609 NSTMIFPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 667
Query: 309 ELVLEQSSAPSSSAMPGTP 365
+ S P ++ + TP
Sbjct: 668 S--ISTSILPHNTTVIATP 684
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 139 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 252
HW + + PI RW+ L H+SL P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P
Sbjct: 96 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 154
Query: 309 ELVLEQSSAPSSSAMPGTP 365
+ S P ++ + TP
Sbjct: 155 S--ISTSILPYNTTVIATP 171
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P
Sbjct: 297 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 355
Query: 309 ELVLEQSSAPSSSAMPGTP 365
+ S P ++ + TP
Sbjct: 356 S--ISTSILPYNTTVIATP 372
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
NS ++ P +VP +T ++PA P S + + S ++ L +S+ L + L+P
Sbjct: 1101 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIP 1159
Query: 309 ELVLEQSSAPSSSAMPGTP 365
+ S P ++ + TP
Sbjct: 1160 S--ISTSMLPYNTTVIATP 1176
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284
NS ++ P A+VP +T ++PA P S + + S ++ L +S+ L +
Sbjct: 1905 NSNMILPSASVPYNTTLIPA-PNATSTAATKMSPSYVANMTTLDSSVSLTR 1954
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 71 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 229
++ VC TD+PC + H ++ C T +T P T C T S +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 152 TCSSTHPYTDGTCCPYTALCSAV 220
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 152 TCSSTHPYTDGTCCPYTALCSAV 220
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
Length = 201
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 209 RELCRDSRYHLCMGGYCCKWSHQCR 135
R CR HLC+G C+W Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Frame = +1
Query: 292 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 372
G +WF SW W + LPH+ + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = -3
Query: 212 CRELCRDSRYHLCMGGYCCKWSHQC---RVAEDG--RPGCRGDQSG 90
C C Y C+ G C KW C + EDG PG G Q G
Sbjct: 1189 CDHKCSKDEYQ-CVSGACVKWPLTCDGKKDCEDGTDEPGICGVQIG 1233
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -1
Query: 469 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 329
+ + QER +TEQTH QG+ Q +Q ++G G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 487 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 395
LK E E+QQ +HHK E+ Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,932,481
Number of Sequences: 59808
Number of extensions: 544618
Number of successful extensions: 2607
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2603
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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