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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20976
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    31   0.72 
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           31   0.96 
SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.2  
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)               29   2.9  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      29   5.1  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    29   5.1  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        29   5.1  
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)                 29   5.1  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          29   5.1  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          29   5.1  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    28   6.7  
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         28   8.9  
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 30/30 (100%), Positives = 30/30 (100%)
 Frame = +2

Query: 329 FGSLIIGYARNPSLKQQLFSYAILGFALSE 418
           FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 126 FGSLIIGYARNPSLKQQLFSYAILGFALSE 155


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 526 TLKPHM-RMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 392
           +L PH     +V  LK    ESEE  E  H  EQ H  +Q +T NG
Sbjct: 198 SLPPHEPHFELVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
           NS ++ PL +VP +T ++PA P   S   +  + S   ++  L +S+ L +      L+P
Sbjct: 79  NSTMILPLTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 137

Query: 309 ELVLEQSSAPSSSAMPGTP 365
              +  S  P ++ +  TP
Sbjct: 138 S--ISTSILPYNTTVIATP 154



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284
           NS ++ PL +VP +T ++PA P   S   +  + S   ++  L +S+ L +
Sbjct: 481 NSTMILPLTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 530



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
           NS ++ P  +VP +T ++PA P   S   +  + S   ++  L +S+ L +      L+P
Sbjct: 280 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 338

Query: 309 ELVLEQSSAPSSSAMPGTP 365
              +  S  P ++ +  TP
Sbjct: 339 S--ISTSILPYNTTVIATP 355


>SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 244 RTLTCCQIHWCWCSDSGS 297
           R  TCCQ H  W SDSGS
Sbjct: 251 RYFTCCQGHLTWRSDSGS 268


>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = -1

Query: 460 EQQERHHKTEQTH-SLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSN----TSSGTSY 296
           ++ E  H+T+ T  S +  E+ +   +Q   +GG  G+ D+E   D  N     + G  +
Sbjct: 54  DKTEDPHRTQGTEDSSKSPESGHKAADQSYEDGGEYGVPDEEDENDVKNKILVAALGHVH 113

Query: 295 SHCRCTSTNEFGSRSMSL 242
           +H   +ST   G++S+ L
Sbjct: 114 THGWTSSTIAAGAQSLGL 131


>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
          Length = 565

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 260 QQVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 165
           Q+ NVLSD  GLE   CR  LC +  +  C  G
Sbjct: 79  QRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 230  GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 138
            G  G  C +LC+   +++C G G C +W+  C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423


>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 230 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 81
           G + P   E CR   +  C    C +++HQC   E+G  P      S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
           NS ++ P  +VP +T ++PA P   S   +  + S   ++  L +S+ L +      L+P
Sbjct: 297 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 355

Query: 309 ELVLEQSSAPSSSAMPGTP 365
              +  S  P ++ +  TP
Sbjct: 356 S--ISTSILPYNTTVIATP 372



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284
           NS ++ P  +VP +T ++PA P   S   +  + S   ++  L +S+ L +
Sbjct: 498 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 547



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284
           NS ++ P  +VP +T ++PA P   S   +  + S   ++  L +S+ L +
Sbjct: 699 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTR 748


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
           NS ++ P  +VP +T ++PA P   S   +  + S   ++  L +S+ L +      L+P
Sbjct: 609 NSTMIFPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 667

Query: 309 ELVLEQSSAPSSSAMPGTP 365
              +  S  P ++ +  TP
Sbjct: 668 S--ISTSILPHNTTVIATP 684


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 139 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 252
           HW + +    PI RW+ L   H+SL   P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
           NS ++ P  +VP +T ++PA P   S   +  + S   ++  L +S+ L +      L+P
Sbjct: 96  NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 154

Query: 309 ELVLEQSSAPSSSAMPGTP 365
              +  S  P ++ +  TP
Sbjct: 155 S--ISTSILPYNTTVIATP 171



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
           NS ++ P  +VP +T ++PA P   S   +  + S   ++  L +S+ L +      L+P
Sbjct: 297 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 355

Query: 309 ELVLEQSSAPSSSAMPGTP 365
              +  S  P ++ +  TP
Sbjct: 356 S--ISTSILPYNTTVIATP 372



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132  NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQRQWE-*LVP 308
            NS ++ P  +VP +T ++PA P   S   +  + S   ++  L +S+ L +      L+P
Sbjct: 1101 NSTMILPSTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIP 1159

Query: 309  ELVLEQSSAPSSSAMPGTP 365
               +  S  P ++ +  TP
Sbjct: 1160 S--ISTSMLPYNTTVIATP 1176



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 132  NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDLLPNSLVLVQ 284
            NS ++ P A+VP +T ++PA P   S   +  + S   ++  L +S+ L +
Sbjct: 1905 NSNMILPSASVPYNTTLIPA-PNATSTAATKMSPSYVANMTTLDSSVSLTR 1954


>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
          Length = 718

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 71  KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 229
           ++  VC  TD+PC  + H ++ C   T   +T P    T C  T   S  +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 152 TCSSTHPYTDGTCCPYTALCSAV 220
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 152 TCSSTHPYTDGTCCPYTALCSAV 220
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 209 RELCRDSRYHLCMGGYCCKWSHQCR 135
           R  CR    HLC+G   C+W  Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197


>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
 Frame = +1

Query: 292 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 372
           G +WF SW W  +   LPH+     + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -3

Query: 212  CRELCRDSRYHLCMGGYCCKWSHQC---RVAEDG--RPGCRGDQSG 90
            C   C    Y  C+ G C KW   C   +  EDG   PG  G Q G
Sbjct: 1189 CDHKCSKDEYQ-CVSGACVKWPLTCDGKKDCEDGTDEPGICGVQIG 1233


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -1

Query: 469 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 329
           +  + QER  +TEQTH       QG+ Q    +Q  ++G   G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 487 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 395
           LK    E E+QQ +HHK E+     Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,932,481
Number of Sequences: 59808
Number of extensions: 544618
Number of successful extensions: 2607
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2603
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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