Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20976
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    62   4e-10
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    62   4e-10
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    62   4e-10
U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   4.5  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC006833-8|AAF60944.1|  360|Caenorhabditis elegans Hypothetical ...    28   7.9  
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr...    25   8.1  
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin...    25   8.1  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = +2

Query: 329 FGSLIIGYARNPSLKQQLFSYAILGFALSE 418
           FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 46  FGALVIGYARNPSLKQQLFSYAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = +2

Query: 329 FGSLIIGYARNPSLKQQLFSYAILGFALSE 418
           FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 46  FGALVIGYARNPSLKQQLFSYAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/30 (93%), Positives = 30/30 (100%)
 Frame = +2

Query: 329 FGSLIIGYARNPSLKQQLFSYAILGFALSE 418
           FG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 70  FGALVIGYARNPSLKQQLFSYAILGFALSE 99


>U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical
           protein F58F9.10 protein.
          Length = 220

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 190 LSLHSSLQCGPSRPHRSLRTLTCCQIHWCWCSDSGSS 300
           L ++S++QCGP    +S     CC ++  W   SG S
Sbjct: 104 LLINSTMQCGPIPKDKSSSNTPCCPVNGIWSDRSGFS 140


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
 Frame = -1

Query: 496 VVFLKVNSLESEEQQERHHKT---EQTHSLRQGETQNGV*EQLLLEGGVPGIADD----- 341
           V+    +S E E+++ERH  +   ++T S+R   T +    + +++  +  +A       
Sbjct: 9   VIIDSSDSSEDEDRKERHSSSSEVDETASMRS--TDSSEPPRTIIDASLNSMASTVYTST 66

Query: 340 -EGAEDCSNTSSGTSYSHCRCTSTNEFGSRS 251
               +  S T S T+Y   +C++ + + SRS
Sbjct: 67  PNSKQSISRTGSSTTYGSSKCSTDDHYRSRS 97


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 137 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 226
           C+    C +     D  CCPY + C A  P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 77  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 202
           N  C     P       +  C+  T C+S +   +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 462 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 334
           KSSR  I  ++  I     KP    E N C+ + FLA PM  E
Sbjct: 21  KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63


>Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical
           protein M199.3 protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 175 HRWYLLSLHSSLQCGPSRPHRSLRTLTCCQIHWCWCSDSGSSWF 306
           +R YLL +H       +  HR  +    CQ+ W       SS F
Sbjct: 196 NRDYLLRVHGKRTTAENPKHRGFQNAKFCQVGWYQMESKNSSKF 239


>Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical
           protein C08B6.6 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 630 PVDAHCRCNTHQSLHHYEGEV 568
           P+   CRCNT  +LH  EG V
Sbjct: 98  PIYVLCRCNTTNTLHRREGVV 118


>AC006833-8|AAF60944.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK616.8 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 199 HSSLQCGPSRPHRSLRTLTCCQIHWCWCSDSGSSWFRSWYWNSLRLPHH 345
           HS L    ++P  SL  LTCC+IH+    ++  +    W ++++ + HH
Sbjct: 76  HSDLFVMANQP--SLGPLTCCEIHYDGAKEALGT---PWKFHTINIFHH 119


>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 24.6 bits (51), Expect(2) = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 322 SNTSSGTSYSHCRCTSTNEFGSRSMSLVTD 233
           S+ +SG+S SH R T  +   SRS +   D
Sbjct: 133 SHPTSGSSSSHARSTGQSGMSSRSAARRND 162



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 15/63 (23%), Positives = 21/63 (33%)
 Frame = -1

Query: 487 LKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS 308
           LK  +L+   +      T  +H  R  +  NG        GG    A    +      SS
Sbjct: 61  LKTANLKHPARPSTESSTSSSHHRRPAQEMNGTSTATATGGGGTSGATTTASSGAPAASS 120

Query: 307 GTS 299
           G S
Sbjct: 121 GGS 123


>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 24.6 bits (51), Expect(2) = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 322 SNTSSGTSYSHCRCTSTNEFGSRSMSLVTD 233
           S+ +SG+S SH R T  +   SRS +   D
Sbjct: 133 SHPTSGSSSSHARSTGQSGMSSRSAARRND 162



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 15/63 (23%), Positives = 21/63 (33%)
 Frame = -1

Query: 487 LKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS 308
           LK  +L+   +      T  +H  R  +  NG        GG    A    +      SS
Sbjct: 61  LKTANLKHPARPSTESSTSSSHHRRPAQEMNGTSTATATGGGGTSGATTTASSGAPAASS 120

Query: 307 GTS 299
           G S
Sbjct: 121 GGS 123


>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 1192

 Score = 24.6 bits (51), Expect(2) = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 322 SNTSSGTSYSHCRCTSTNEFGSRSMSLVTD 233
           S+ +SG+S SH R T  +   SRS +   D
Sbjct: 133 SHPTSGSSSSHARSTGQSGMSSRSAARRND 162



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 15/63 (23%), Positives = 21/63 (33%)
 Frame = -1

Query: 487 LKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS 308
           LK  +L+   +      T  +H  R  +  NG        GG    A    +      SS
Sbjct: 61  LKTANLKHPARPSTESSTSSSHHQRPAQEMNGTSTPTATGGGGTSGATTTASSGAPAASS 120

Query: 307 GTS 299
           G S
Sbjct: 121 GGS 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,309,106
Number of Sequences: 27780
Number of extensions: 384568
Number of successful extensions: 1400
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)