Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20976
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   1e-04
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    30   1.4  
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ...    29   3.2  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   7.3  
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom...    27   9.6  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +2

Query: 329 FGSLIIGYARNPSLKQQLFSYAILGFALSE 418
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 491 HYYCHPHMRFQCILSGVDSHGIECLETSP 577
           H +C P +  Q +L+GVD+H ++C +  P
Sbjct: 262 HIFCFPCI-LQYLLTGVDNHKVDCFKRCP 289


>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/105 (23%), Positives = 45/105 (42%)
 Frame = -1

Query: 460 EQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRC 281
           E Q     + + H + Q  T+  V + L+  G    + +++    C N  S  SYS    
Sbjct: 277 ELQNTSSLSRKKHYVDQYTTKEPVEDGLIGRGEEEKVENEKKRPPCWNMLSSKSYSEEES 336

Query: 280 TSTNEFGSRSMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGR 146
            + N+  + + S   +  WK R     +GT+ T  V + T+ + R
Sbjct: 337 GAWNDEDTINRSSSKEDNWKRR--RFSIGTSATDKVILSTSMAAR 379


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 64  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 174
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
           domain, PF03343: SART-1 family
          Length = 820

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 355 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 260
           GI DD+G ++  +  S   +   R   T+EFG
Sbjct: 660 GIVDDDGGKESKDKESKDRFKDIRIERTDEFG 691


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,597
Number of Sequences: 28952
Number of extensions: 347003
Number of successful extensions: 1044
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)