BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20976 (730 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su... 44 1e-04 At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 30 1.4 At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 29 3.2 At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 28 7.3 At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 27 9.6 >At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C subunit family protein similar to ATPase subunit 9 [Arabidopsis thaliana] GI:15215920; contains Pfam profile PF00137: ATP synthase subunit C Length = 85 Score = 43.6 bits (98), Expect = 1e-04 Identities = 21/30 (70%), Positives = 23/30 (76%) Frame = +2 Query: 329 FGSLIIGYARNPSLKQQLFSYAILGFALSE 418 F SLI ARNPSL +Q F YAILGFAL+E Sbjct: 39 FSSLIHSVARNPSLAKQSFGYAILGFALTE 68 >At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 772 Score = 30.3 bits (65), Expect = 1.4 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 491 HYYCHPHMRFQCILSGVDSHGIECLETSP 577 H +C P + Q +L+GVD+H ++C + P Sbjct: 262 HIFCFPCI-LQYLLTGVDNHKVDCFKRCP 289 >At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 437 Score = 29.1 bits (62), Expect = 3.2 Identities = 25/105 (23%), Positives = 45/105 (42%) Frame = -1 Query: 460 EQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRC 281 E Q + + H + Q T+ V + L+ G + +++ C N S SYS Sbjct: 277 ELQNTSSLSRKKHYVDQYTTKEPVEDGLIGRGEEEKVENEKKRPPCWNMLSSKSYSEEES 336 Query: 280 TSTNEFGSRSMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGR 146 + N+ + + S + WK R +GT+ T V + T+ + R Sbjct: 337 GAWNDEDTINRSSSKEDNWKRR--RFSIGTSATDKVILSTSMAAR 379 >At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1095 Score = 27.9 bits (59), Expect = 7.3 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Frame = +1 Query: 64 LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 174 L++ CC + P LPS LH +C LQ +P I Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720 >At5g16780.1 68418.m01965 SART-1 family protein contains Pfam domain, PF03343: SART-1 family Length = 820 Score = 27.5 bits (58), Expect = 9.6 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -1 Query: 355 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 260 GI DD+G ++ + S + R T+EFG Sbjct: 660 GIVDDDGGKESKDKESKDRFKDIRIERTDEFG 691 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,126,597 Number of Sequences: 28952 Number of extensions: 347003 Number of successful extensions: 1044 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1043 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1594686376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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