Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20974
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   2.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   4.4  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   4.4  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   5.8  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   7.7  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 399 RWDALTMTRLHIALRYTCDSYLIDRLL 319
           RW   T  RLH  LR+  +++L+D LL
Sbjct: 239 RWRQKTRERLHQKLRFQKNAFLLDVLL 265


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +3

Query: 303  KKLINKEV---DLSDTNHKYIVMQYVTESLLM 389
            K+L NKE    +LSD + KYI +Q + E+LL+
Sbjct: 1131 KELENKEEKCQNLSDASLKYIELQEIHENLLL 1162


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 462 YTSTQQSRHQTFDLYPKA 409
           Y  +Q +RH  FD++PK+
Sbjct: 181 YAGSQLNRHSVFDIFPKS 198


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 159 RICKASLGG*SRCNVLNVCSTKD*SSKIKTDRVSSTEKGFDFDGLFNFKKLINKEVDLSD 338
           RI K SLGG SR  ++  CS     S   T+ +S+   G     + N K ++N E+ + +
Sbjct: 284 RILKESLGGNSRTTLIINCSP---DSYNATETLSTLRFGHRAKSIKN-KAVVNSELSVDE 339

Query: 339 TNHKYIV 359
              +  +
Sbjct: 340 MKRQLYI 346


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 539 ILRLIDSLPNPAYFPDHTSSLEPP 610
           I+ L   LPNP YFP      E P
Sbjct: 38  IISLAGGLPNPEYFPIREMDAEIP 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,812
Number of Sequences: 5004
Number of extensions: 54871
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)