Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20974
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    30   2.0  
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    29   2.6  
03_02_0487 + 8821543-8821866,8821958-8822335,8822928-8823020,882...    28   7.9  

>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -1

Query: 320 FVNQLLKVEQAIEIKTLFG*RYSICLNFG*SIFSGADVKYVTS 192
           F NQ+  VE+A E   LFG   +I L     IFSG  VKY ++
Sbjct: 266 FANQITTVEEAKEFYPLFGLGANIAL-----IFSGRTVKYFSN 303


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 320 FVNQLLKVEQAIEIKTLFG*RYSICLNFG*SIFSGADVKYVTS 192
           F NQ+  VE+A E   LFG   ++ L     IFSG  VKY ++
Sbjct: 245 FANQITTVEEAKEFYPLFGLGANVAL-----IFSGRTVKYFSN 282


>03_02_0487 +
           8821543-8821866,8821958-8822335,8822928-8823020,
           8823613-8824236
          Length = 472

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +2

Query: 500 SIYWSSSLEPHPMILRLIDSLPNPAYFPDHTSSL-----EPPYTFLERVEQLWNIAKTLY 664
           S++W +++E H    R +D + N A+      SL             R+E++WNI +  +
Sbjct: 348 SVFWETTMESHLHDYRAVDGV-NIAHAGRTAVSLVRFGDSSDGNTRTRMEEVWNIEEVDF 406

Query: 665 NRWRL 679
           N W L
Sbjct: 407 NIWGL 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,453
Number of Sequences: 37544
Number of extensions: 326992
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)