Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20974
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34990.1 68417.m04961 myb family transcription factor (MYB32)...    31   0.54 
At3g20710.1 68416.m02621 F-box protein-related contains weak hit...    30   1.2  
At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family pr...    28   6.6  
At5g37540.1 68418.m04521 aspartyl protease family protein weak s...    27   8.8  

>At4g34990.1 68417.m04961 myb family transcription factor (MYB32)
           similar to myb DNA-binding protein GI:19052 from
           [Hordeum vulgare]
          Length = 274

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 150 FR*RICKASLGG*SRCNVLNV-CSTKD*SSKIKTDRVSSTEKGFDFDGLFNFKKL 311
           +R   C+   G    C+  NV C T+D SS   +    S+  G+DF GL N + L
Sbjct: 212 YRCSACRFGFGNGKECSCNNVKCQTEDSSSSSYSSTDISSSIGYDFLGLNNTRVL 266


>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           contains weak hit to Pfam PF00646: F-box domain
          Length = 362

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 406 NCFWIQIKRLMP*LLSGCIATCILGFQLSSTVHLLVVIAG 525
           N +W Q KR+MP    GC     LG+  SS  H ++ + G
Sbjct: 125 NPYWGQTKRIMPRPPFGCFDRYALGYDKSSGSHKILRLFG 164


>At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 494

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 509 WSSSLEPHPMILRLIDSLPNPAYF 580
           W SS +PHP  L+++ + P+  YF
Sbjct: 47  WFSSNQPHPQDLQMLQNQPDFRYF 70


>At5g37540.1 68418.m04521 aspartyl protease family protein weak
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Prosite
           PS00141: Eukaryotic and viral aspartyl proteases active
           site; contains 1 predicted transmembrane domain
          Length = 442

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
 Frame = +2

Query: 467 LVFWVFNCLQLSIYWSSSLEPH-PMI-LRLIDSLPNPAYFPDHTSSLEP-----PYTFLE 625
           L  + F C  +S+ WSSSL  H P+  LRL  +  + ++     S   P     PYTF  
Sbjct: 13  LYIFFFFCYSVSLSWSSSLSLHFPLTSLRLTPTTNSSSFKTSLLSRRNPSPPSSPYTFRS 72

Query: 626 RVE 634
            ++
Sbjct: 73  NIK 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,373
Number of Sequences: 28952
Number of extensions: 282139
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)