Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20973
         (392 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006C1BA4 Cluster: PREDICTED: proline-rich synapse-...    36   0.37 
UniRef50_A4I9X4 Cluster: Amastin-like surface protein, putative;...    35   0.48 

>UniRef50_UPI00006C1BA4 Cluster: PREDICTED: proline-rich
            synapse-associated protein 2 isoform 4; n=1; Homo
            sapiens|Rep: PREDICTED: proline-rich synapse-associated
            protein 2 isoform 4 - Homo sapiens
          Length = 1823

 Score = 35.5 bits (78), Expect = 0.37
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 354  RCLALGFR--ARLQQ*YGGWRAPDGLWTRAACLGG--RAAPPARXTHPSSP 214
            R +A G R  AR +   GGWR+  G     +C  G  RAAPPAR  HP SP
Sbjct: 1093 RAMARGSRSAARARPRTGGWRS--GAAPLCSCPWGPSRAAPPARICHPYSP 1141


>UniRef50_A4I9X4 Cluster: Amastin-like surface protein, putative;
           n=2; Leishmania infantum|Rep: Amastin-like surface
           protein, putative - Leishmania infantum
          Length = 547

 Score = 35.1 bits (77), Expect = 0.48
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 291 DGLWTRAACLGGRAAPPARXTHPSSPANG 205
           DG W R  C+GGR  PP   TH  + A G
Sbjct: 100 DGRWRRWRCVGGRCCPPPPHTHRHTRAEG 128


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,159,099
Number of Sequences: 1657284
Number of extensions: 5044872
Number of successful extensions: 18272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18265
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)