Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20973
         (392 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   1.9  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   2.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   2.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.4  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    20   7.6  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 147 KNFSEEVGTMREQEGDGPE 203
           KNF++   + R  E DGPE
Sbjct: 415 KNFNDSPESNRSNEIDGPE 433


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 70  ISAVNPHEFGTVTKNDVVEI 129
           +S V+PH+   + +ND  EI
Sbjct: 4   VSVVSPHKINVLQQNDRREI 23


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 350 ASRSASGRGCSNDTVGGARPTAC 282
           ++ S  G   +N   G  RP AC
Sbjct: 122 SATSGGGANLTNSLTGPVRPAAC 144


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 86   RTSSERSQKTTSSRSEVEINEELQRGSGDDEG 181
            +   E S      +  VEI ++LQ+  G D+G
Sbjct: 1368 KKKEELSPNALLDKQAVEIVKQLQKLQGIDDG 1399


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 86   RTSSERSQKTTSSRSEVEINEELQRGSGDDEG 181
            +   E S      +  VEI ++LQ+  G D+G
Sbjct: 1368 KKKEELSPNALLDKQAVEIVKQLQKLQGIDDG 1399


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 86   RTSSERSQKTTSSRSEVEINEELQRGSGDDEG 181
            +   E S      +  VEI ++LQ+  G D+G
Sbjct: 1368 KKKEELSPNALLDKQAVEIVKQLQKLQGIDDG 1399


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 86   RTSSERSQKTTSSRSEVEINEELQRGSGDDEG 181
            +   E S      +  VEI ++LQ+  G D+G
Sbjct: 1368 KKKEELSPNALLDKQAVEIVKQLQKLQGIDDG 1399


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 119 TSFFVTVPNSCGFTALILIHILMENREPSVRSNETTV 9
           T  F      C F ALI+++I+   R+  V   ++ +
Sbjct: 72  THIFFFFAICCDFIALIVVNIVHVFRKRRVNYKDSNI 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,116
Number of Sequences: 336
Number of extensions: 1098
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8330471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)