Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20973
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.0  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.0  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    25   3.2  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   4.2  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   4.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   9.7  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 34  LGSRFSIKMCIRISAVNPHEFGTVTKN 114
           LGS+ S  +   +S VNP++ G++ KN
Sbjct: 594 LGSQNSTSLSRNLSTVNPYDEGSIIKN 620


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -3

Query: 312 YGGWRAPDGLWTRAACLGGRAAPPARXTHPSSPANG 205
           YG   AP      AA    R + PA  T P SPA G
Sbjct: 275 YGSHAAPYASTPSAAVGSSRGSTPASATVPISPARG 310


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 73  SAVNPHEFGTVTKNDVVEI 129
           S+ NPH F +VTK  VV I
Sbjct: 216 SSANPHHFLSVTKQGVVAI 234


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 82  NPHEFGTVTKNDVVEIRSRNQ 144
           N H F  ++ ND+V +R RNQ
Sbjct: 339 NSHSF-VISPNDIVYVRERNQ 358


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 83  IRTSSERSQ--KTTSSRSEVEINEELQRGSGDDEG 181
           + T S+++   K + S+S+  +N  L  G G D G
Sbjct: 19  VETQSDKNHLPKASPSQSQSPVNTSLHNGDGKDNG 53


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 257  PPKQAARVHRPSGARHPPYHCCSRAL 334
            PP Q++  H PS A   P H  + AL
Sbjct: 1520 PPSQSSFAHVPSPAPPAPQHPSAAAL 1545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,298,370
Number of Sequences: 5004
Number of extensions: 18341
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)