Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20973
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0357 - 2816650-2817897                                           29   1.0  
10_05_0005 + 7750243-7750545                                           28   3.1  
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   3.1  
07_03_0698 - 20765305-20768526                                         27   4.1  
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722...    26   9.4  
08_02_0390 + 16612086-16612625                                         26   9.4  
06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683           26   9.4  
04_01_0363 + 4754650-4755912                                           26   9.4  

>01_01_0357 - 2816650-2817897
          Length = 415

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +2

Query: 179 GTGRRRPGEPXXXXXXXXXXXXXXXXPPKQAARVHRPSGARHP 307
           G  RR PG P                P + A  VHRP   RHP
Sbjct: 196 GRARRVPGSPPLLPGGRGIIVIRRRPPRRGALAVHRPRRERHP 238


>10_05_0005 + 7750243-7750545
          Length = 100

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +2

Query: 260 PKQAARVHRPS----GAR---HPPYHCCSRALKPSARQRLRGGSSANSR 385
           P +   VHRP     GA    H P HC  R+ + + R R+ GG    +R
Sbjct: 4   PLRHGSVHRPEIGPLGANVEVHTPEHCLLRSSRGNHRLRVHGGEKYGAR 52


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 150 NFSEEVGTMREQEGDGPESR*PDSMDE 230
           +FSE+VG + E E + P  R PD +DE
Sbjct: 331 SFSEDVG-INEDEEENPPDRIPDMVDE 356


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 85  PHEFGTVTKNDVVEIRSRNQRRTSARKWGR*GNRKATARRAVSRTRW 225
           P E  T  +     +R RNQRRT+A  W         +RRA+    W
Sbjct: 134 PVEVTTTMEPRDASVRPRNQRRTNAGSWNN------PSRRAILEDGW 174


>12_02_0030 +
           12469707-12469902,12470337-12470658,12472208-12472245,
           12472486-12473573
          Length = 547

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 366 PPRRRCLALGFR-ARLQQ*YGGWRAPDGLWTRAACLGGRAAPPARXTHPSSPANG 205
           P RRR    G R A +++  GG     G   RAA LGG A   AR       A G
Sbjct: 77  PERRRQEGAGGRGAGVRRVEGGGSGAVGEGARAAVLGGAATIGARRLWAGGAARG 131


>08_02_0390 + 16612086-16612625
          Length = 179

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 146 EELQRGSGDDEGTGRRR 196
           EE   G GD+EG GRRR
Sbjct: 92  EEQGGGGGDEEGRGRRR 108


>06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683
          Length = 583

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 312 YGGWRAPDGLWTRAACLGGRAAPPARXTHPSSPA 211
           +GG  A  G + R ACL    +P    + P SP+
Sbjct: 99  FGGLLAAGGCFDRGACLSRHESPRYYKSSPFSPS 132


>04_01_0363 + 4754650-4755912
          Length = 420

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 380 SSPRSLH-VGVASRSASGRGCSNDTVGGAR 294
           S+P  L   G   R  SGRGC  D  G AR
Sbjct: 299 SNPGRLRSAGERERGGSGRGCEGDVDGVAR 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,630,945
Number of Sequences: 37544
Number of extensions: 160968
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)