BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20973 (392 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0357 - 2816650-2817897 29 1.0 10_05_0005 + 7750243-7750545 28 3.1 08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099... 28 3.1 07_03_0698 - 20765305-20768526 27 4.1 12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722... 26 9.4 08_02_0390 + 16612086-16612625 26 9.4 06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683 26 9.4 04_01_0363 + 4754650-4755912 26 9.4 >01_01_0357 - 2816650-2817897 Length = 415 Score = 29.5 bits (63), Expect = 1.0 Identities = 15/43 (34%), Positives = 16/43 (37%) Frame = +2 Query: 179 GTGRRRPGEPXXXXXXXXXXXXXXXXPPKQAARVHRPSGARHP 307 G RR PG P P + A VHRP RHP Sbjct: 196 GRARRVPGSPPLLPGGRGIIVIRRRPPRRGALAVHRPRRERHP 238 >10_05_0005 + 7750243-7750545 Length = 100 Score = 27.9 bits (59), Expect = 3.1 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Frame = +2 Query: 260 PKQAARVHRPS----GAR---HPPYHCCSRALKPSARQRLRGGSSANSR 385 P + VHRP GA H P HC R+ + + R R+ GG +R Sbjct: 4 PLRHGSVHRPEIGPLGANVEVHTPEHCLLRSSRGNHRLRVHGGEKYGAR 52 >08_02_0021 + 11307795-11308093,11308454-11308556,11309623-11309931, 11310190-11310618 Length = 379 Score = 27.9 bits (59), Expect = 3.1 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +3 Query: 150 NFSEEVGTMREQEGDGPESR*PDSMDE 230 +FSE+VG + E E + P R PD +DE Sbjct: 331 SFSEDVG-INEDEEENPPDRIPDMVDE 356 >07_03_0698 - 20765305-20768526 Length = 1073 Score = 27.5 bits (58), Expect = 4.1 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = +1 Query: 85 PHEFGTVTKNDVVEIRSRNQRRTSARKWGR*GNRKATARRAVSRTRW 225 P E T + +R RNQRRT+A W +RRA+ W Sbjct: 134 PVEVTTTMEPRDASVRPRNQRRTNAGSWNN------PSRRAILEDGW 174 >12_02_0030 + 12469707-12469902,12470337-12470658,12472208-12472245, 12472486-12473573 Length = 547 Score = 26.2 bits (55), Expect = 9.4 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = -3 Query: 366 PPRRRCLALGFR-ARLQQ*YGGWRAPDGLWTRAACLGGRAAPPARXTHPSSPANG 205 P RRR G R A +++ GG G RAA LGG A AR A G Sbjct: 77 PERRRQEGAGGRGAGVRRVEGGGSGAVGEGARAAVLGGAATIGARRLWAGGAARG 131 >08_02_0390 + 16612086-16612625 Length = 179 Score = 26.2 bits (55), Expect = 9.4 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +2 Query: 146 EELQRGSGDDEGTGRRR 196 EE G GD+EG GRRR Sbjct: 92 EEQGGGGGDEEGRGRRR 108 >06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683 Length = 583 Score = 26.2 bits (55), Expect = 9.4 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -3 Query: 312 YGGWRAPDGLWTRAACLGGRAAPPARXTHPSSPA 211 +GG A G + R ACL +P + P SP+ Sbjct: 99 FGGLLAAGGCFDRGACLSRHESPRYYKSSPFSPS 132 >04_01_0363 + 4754650-4755912 Length = 420 Score = 26.2 bits (55), Expect = 9.4 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = -1 Query: 380 SSPRSLH-VGVASRSASGRGCSNDTVGGAR 294 S+P L G R SGRGC D G AR Sbjct: 299 SNPGRLRSAGERERGGSGRGCEGDVDGVAR 328 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,630,945 Number of Sequences: 37544 Number of extensions: 160968 Number of successful extensions: 640 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 640 length of database: 14,793,348 effective HSP length: 74 effective length of database: 12,015,092 effective search space used: 672845152 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -