BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20973 (392 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_50198| Best HMM Match : Frizzled (HMM E-Value=0) 30 0.77 SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) 28 2.3 SB_56616| Best HMM Match : zf-NF-X1 (HMM E-Value=9.9) 28 3.1 SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1 SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023) 27 7.2 SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2 SB_17803| Best HMM Match : SRCR (HMM E-Value=0) 26 9.5 SB_35483| Best HMM Match : DRAT (HMM E-Value=4.7) 26 9.5 SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1) 26 9.5 >SB_50198| Best HMM Match : Frizzled (HMM E-Value=0) Length = 654 Score = 29.9 bits (64), Expect = 0.77 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +2 Query: 257 PPKQAARVHRPSGARHPPYHCCS--RALKPSARQRLRGGSSANSRVT 391 PPK + +VH P + P YH S + PS R G S A + +T Sbjct: 595 PPKNSLQVHMPPPSVQPVYHHTSAFAPIAPSPATRSVGSSPAPNSLT 641 >SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) Length = 1832 Score = 28.3 bits (60), Expect = 2.3 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -3 Query: 300 RAPDGLWTRAACLGGRAAPP-ARXTHPSSPAN 208 R PDG R C R +PP +R +H SSP + Sbjct: 387 RIPDGEHLRPGCSYYRGSPPSSRHSHSSSPTS 418 >SB_56616| Best HMM Match : zf-NF-X1 (HMM E-Value=9.9) Length = 275 Score = 27.9 bits (59), Expect = 3.1 Identities = 16/65 (24%), Positives = 25/65 (38%) Frame = +2 Query: 92 SSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRRPGEPXXXXXXXXXXXXXXXXPPKQA 271 +S R + S+ + E ++ + G GRR P EP PPK+ Sbjct: 38 ASLRRDRVHPQESKPRLVENQEQTNNTGTGPGRRYPNEPTPKAGTIVIQSGRAVKPPKRL 97 Query: 272 ARVHR 286 R +R Sbjct: 98 GRHYR 102 >SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1080 Score = 27.9 bits (59), Expect = 3.1 Identities = 16/65 (24%), Positives = 25/65 (38%) Frame = +2 Query: 92 SSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRRPGEPXXXXXXXXXXXXXXXXPPKQA 271 +S R + S+ + E ++ + G GRR P EP PPK+ Sbjct: 38 ASLRRDRVHPQESKPRLVENQEQTNNTGTGPGRRYPNEPTPKAGTIVIQSGRAVKPPKRL 97 Query: 272 ARVHR 286 R +R Sbjct: 98 GRHYR 102 >SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023) Length = 1640 Score = 26.6 bits (56), Expect = 7.2 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +2 Query: 257 PPKQAARVHRPSGARHPPYHCCSRALK 337 PP+Q H P ARHP SR+ K Sbjct: 1316 PPRQRRANHEPRTARHPTSPWTSRSRK 1342 >SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 711 Score = 26.6 bits (56), Expect = 7.2 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +2 Query: 83 IRTSSERSQKTTSSRSEVEINEELQRGSGDD-EGTGRRRPG 202 I E ++ S +++ + RG+GDD +GTG R G Sbjct: 543 INAVKEDKGESLDSGERAGVSDNIDRGTGDDRDGTGGDRDG 583 >SB_17803| Best HMM Match : SRCR (HMM E-Value=0) Length = 1428 Score = 26.2 bits (55), Expect = 9.5 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +3 Query: 36 RLPVFH*NVYKNKCSESARVRNGH 107 R+ +FH + + C ++ R+RNGH Sbjct: 863 RVELFHRGEWGSVCDDNWRIRNGH 886 >SB_35483| Best HMM Match : DRAT (HMM E-Value=4.7) Length = 512 Score = 26.2 bits (55), Expect = 9.5 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 269 AARVHRPSGARHPPYHCCSRALKPSARQR 355 +A H SG + P H SRA +PS+ +R Sbjct: 285 SACAHWASGVQFPDLHMVSRAQQPSSLRR 313 >SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1) Length = 442 Score = 26.2 bits (55), Expect = 9.5 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 269 AARVHRPSGARHPPYHCCSRALKPSARQR 355 +A H SG + P H SRA +PS+ +R Sbjct: 204 SACAHWASGVQFPDLHMVSRAQQPSSLRR 232 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,447,361 Number of Sequences: 59808 Number of extensions: 154622 Number of successful extensions: 487 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 453 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 486 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 678472135 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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