Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20973
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)                    30   0.77 
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     28   2.3  
SB_56616| Best HMM Match : zf-NF-X1 (HMM E-Value=9.9)                  28   3.1  
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 27   7.2  
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_17803| Best HMM Match : SRCR (HMM E-Value=0)                        26   9.5  
SB_35483| Best HMM Match : DRAT (HMM E-Value=4.7)                      26   9.5  
SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1)                    26   9.5  

>SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 654

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 257 PPKQAARVHRPSGARHPPYHCCS--RALKPSARQRLRGGSSANSRVT 391
           PPK + +VH P  +  P YH  S    + PS   R  G S A + +T
Sbjct: 595 PPKNSLQVHMPPPSVQPVYHHTSAFAPIAPSPATRSVGSSPAPNSLT 641


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 300 RAPDGLWTRAACLGGRAAPP-ARXTHPSSPAN 208
           R PDG   R  C   R +PP +R +H SSP +
Sbjct: 387 RIPDGEHLRPGCSYYRGSPPSSRHSHSSSPTS 418


>SB_56616| Best HMM Match : zf-NF-X1 (HMM E-Value=9.9)
          Length = 275

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +2

Query: 92  SSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRRPGEPXXXXXXXXXXXXXXXXPPKQA 271
           +S R  +     S+  + E  ++ +    G GRR P EP                PPK+ 
Sbjct: 38  ASLRRDRVHPQESKPRLVENQEQTNNTGTGPGRRYPNEPTPKAGTIVIQSGRAVKPPKRL 97

Query: 272 ARVHR 286
            R +R
Sbjct: 98  GRHYR 102


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +2

Query: 92  SSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRRPGEPXXXXXXXXXXXXXXXXPPKQA 271
           +S R  +     S+  + E  ++ +    G GRR P EP                PPK+ 
Sbjct: 38  ASLRRDRVHPQESKPRLVENQEQTNNTGTGPGRRYPNEPTPKAGTIVIQSGRAVKPPKRL 97

Query: 272 ARVHR 286
            R +R
Sbjct: 98  GRHYR 102


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 257  PPKQAARVHRPSGARHPPYHCCSRALK 337
            PP+Q    H P  ARHP     SR+ K
Sbjct: 1316 PPRQRRANHEPRTARHPTSPWTSRSRK 1342


>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 83  IRTSSERSQKTTSSRSEVEINEELQRGSGDD-EGTGRRRPG 202
           I    E   ++  S     +++ + RG+GDD +GTG  R G
Sbjct: 543 INAVKEDKGESLDSGERAGVSDNIDRGTGDDRDGTGGDRDG 583


>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1428

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 36  RLPVFH*NVYKNKCSESARVRNGH 107
           R+ +FH   + + C ++ R+RNGH
Sbjct: 863 RVELFHRGEWGSVCDDNWRIRNGH 886


>SB_35483| Best HMM Match : DRAT (HMM E-Value=4.7)
          Length = 512

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 269 AARVHRPSGARHPPYHCCSRALKPSARQR 355
           +A  H  SG + P  H  SRA +PS+ +R
Sbjct: 285 SACAHWASGVQFPDLHMVSRAQQPSSLRR 313


>SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1)
          Length = 442

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 269 AARVHRPSGARHPPYHCCSRALKPSARQR 355
           +A  H  SG + P  H  SRA +PS+ +R
Sbjct: 204 SACAHWASGVQFPDLHMVSRAQQPSSLRR 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,447,361
Number of Sequences: 59808
Number of extensions: 154622
Number of successful extensions: 487
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)