Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20973
         (392 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121674-1|AAM52001.1|  611|Drosophila melanogaster RE22741p pro...    29   2.9  
AF296285-1|AAL33883.1|  611|Drosophila melanogaster SPZ3 protein.      29   2.9  
AE014134-1358|AAF52574.2|  611|Drosophila melanogaster CG7104-PA...    29   2.9  
AY069568-1|AAL39713.1|  513|Drosophila melanogaster LD29830p pro...    27   6.7  
AF055719-1|AAC32822.3|  513|Drosophila melanogaster splicing fac...    27   6.7  
AE014134-1720|AAF52825.1|  513|Drosophila melanogaster CG4602-PA...    27   6.7  

>AY121674-1|AAM52001.1|  611|Drosophila melanogaster RE22741p
           protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 89  TSSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRRPGE 205
           +SS  S  +T+ +S +++ +    G G  EG+  R PG+
Sbjct: 133 SSSRSSSSSTTGQSSIQLTQTHASGRGPAEGSYSRYPGQ 171


>AF296285-1|AAL33883.1|  611|Drosophila melanogaster SPZ3 protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 89  TSSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRRPGE 205
           +SS  S  +T+ +S +++ +    G G  EG+  R PG+
Sbjct: 133 SSSRSSSSSTTGQSSIQLTQTHASGRGPAEGSYSRYPGQ 171


>AE014134-1358|AAF52574.2|  611|Drosophila melanogaster CG7104-PA
           protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 89  TSSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRRPGE 205
           +SS  S  +T+ +S +++ +    G G  EG+  R PG+
Sbjct: 133 SSSRSSSSSTTGQSSIQLTQTHASGRGPAEGSYSRYPGQ 171


>AY069568-1|AAL39713.1|  513|Drosophila melanogaster LD29830p
           protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 130 RSRNQRRTSARKWGR*GNRKATARRAVSRTR 222
           RSR+ R TS R+  R G+R+   RR+VSR+R
Sbjct: 300 RSRSHRSTSRRRSRRSGSRE---RRSVSRSR 327


>AF055719-1|AAC32822.3|  513|Drosophila melanogaster splicing factor
           SRp54 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 130 RSRNQRRTSARKWGR*GNRKATARRAVSRTR 222
           RSR+ R TS R+  R G+R+   RR+VSR+R
Sbjct: 300 RSRSHRSTSRRRSRRSGSRE---RRSVSRSR 327


>AE014134-1720|AAF52825.1|  513|Drosophila melanogaster CG4602-PA
           protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 130 RSRNQRRTSARKWGR*GNRKATARRAVSRTR 222
           RSR+ R TS R+  R G+R+   RR+VSR+R
Sbjct: 300 RSRSHRSTSRRRSRRSGSRE---RRSVSRSR 327


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,422,117
Number of Sequences: 53049
Number of extensions: 245455
Number of successful extensions: 1020
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1107890535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)