Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20973
(392 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical pr... 30 0.68
AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical ... 29 1.2
Z81576-3|CAB04641.1| 534|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 27 3.6
U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedg... 27 3.6
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 27 3.6
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 27 3.6
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 27 4.8
Z34799-3|CAA84316.3| 539|Caenorhabditis elegans Hypothetical pr... 26 8.4
U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical pr... 26 8.4
>Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical
protein F23A7.5 protein.
Length = 632
Score = 29.9 bits (64), Expect = 0.68
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 19 SLERTLGSRFSIKMCIRISAVN----PHEFGTVTKN-DVVEIRSRNQRRTSARKWGR*GN 183
SL TLG + K+ I + A+ P G++ K RSR+ RR S + G G+
Sbjct: 546 SLALTLGPEDAAKLNIDVEALKKKLIPSTSGSIEKRRSQSRSRSRDSRRHSRSRSGSRGS 605
Query: 184 RKATARRA 207
R+ + RRA
Sbjct: 606 RRRSDRRA 613
>AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical
protein C09E8.1a protein.
Length = 783
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 83 IRTSSERSQKTTSSRSEVEINE-ELQRGSGDDEG 181
IR S + +++R E++E EL RG+GDD G
Sbjct: 734 IRAHSVEHNRPSNTREASEVDEAELPRGAGDDNG 767
>Z81576-3|CAB04641.1| 534|Caenorhabditis elegans Hypothetical
protein R10E8.4 protein.
Length = 534
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 167 HFLAEVLR*FLLLISTTSFFVTVPNSCGFTALIL 66
H + E+LR +L+ F +TVP+ G A IL
Sbjct: 117 HHITEILRKREILLKVNEFVLTVPSKNGHVASIL 150
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 92 SSERSQKTTSSRSEVEINEELQRGSGDDEG 181
SS+R QK TSSR +++E +D+G
Sbjct: 725 SSKRKQKDTSSRKMKQLDESSADSDSEDDG 754
>U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 9 protein.
Length = 588
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 76 AVNPHEFGTVTKNDVVEIRSRNQRRTSARKWGR*GNRKATAR 201
A NP++ T+N V RSRN T+ RK GR G + +++
Sbjct: 244 AENPYQ----TRNGVNNYRSRNSYGTNNRKHGRNGKKGKSSK 281
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 89 TSSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRR 196
T E+ QK T+ E+E+NEE + G E T +R+
Sbjct: 438 TPDEKYQKKTTKVEEIEMNEE-EDGEIGAESTSKRK 472
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 89 TSSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRR 196
T E+ QK T+ E+E+NEE + G E T +R+
Sbjct: 438 TPDEKYQKKTTKVEEIEMNEE-EDGEIGAESTSKRK 472
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 311 YHCCSRALKPSARQRLRGG 367
Y CCS+ K S R+RGG
Sbjct: 1478 YFCCSKQTKKSNSNRIRGG 1496
>Z34799-3|CAA84316.3| 539|Caenorhabditis elegans Hypothetical
protein F34D10.6 protein.
Length = 539
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 141 STKNFSEEVGTMREQEGDGPESR*PDSMDEYXG 239
+T+ S TMR +E D PE PD ++ G
Sbjct: 286 ATRKKSTSDNTMRSRESDSPEGIEPDVLNRIQG 318
>U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical
protein K04G7.1 protein.
Length = 558
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 95 SERSQKTTSSRSEVEINEELQRGS 166
S RSQ++TSS S ++N E QR S
Sbjct: 346 SSRSQESTSSASPQKMNHEQQRYS 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,523,915
Number of Sequences: 27780
Number of extensions: 114991
Number of successful extensions: 462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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