Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20973
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.95 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               20   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 378 FAEEPPRRRCLALGFRARLQQ*YGGWRAPDGLWTRA 271
           F +EPP R   + G  A ++    G   PD +W RA
Sbjct: 5   FVKEPPNRVDFSNGTGAVVECQARGNPQPDIIWVRA 40


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 107 QKTTSSRSEVEINEELQR 160
           ++    RS ++INEE+QR
Sbjct: 476 RRVAVDRSGIDINEEIQR 493


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 140 FLLLISTTSFFVTVPNSCGFTA 75
           FL +I  TS+FVT    C   A
Sbjct: 11  FLSVILITSYFVTPVMPCNCKA 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,073
Number of Sequences: 438
Number of extensions: 1477
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)