Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20973
         (392 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09570.1 68418.m01108 expressed protein contains Pfam domain,...    29   1.1  
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    28   2.0  
At3g06670.1 68416.m00786 expressed protein                             27   3.4  
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ...    27   6.0  
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ...    27   6.0  
At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta...    26   7.9  

>At5g09570.1 68418.m01108 expressed protein contains Pfam domain,
           PF04933: Protein of unknown function (DUF657)
          Length = 139

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 263 KQAARVHRPSGARHPPYHCCSRALKPSARQRLRGGS 370
           + + R  RP+ AR PP    +RA  P+  Q   GGS
Sbjct: 9   RSSYRPSRPAAARSPPPQSVNRAPPPATAQPSSGGS 44


>At1g27750.1 68414.m03391 ubiquitin system component Cue
            domain-containing protein very low similarity to ASC-1
            complex subunit P100 [Homo sapiens] GI:12061187; contains
            Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 83   IRTSSERSQKTTSSRSEVEINEELQRGSGDDEGTGRRRPG 202
            +     + +   SS +  E+N E + G G   G GRR  G
Sbjct: 1912 VNREQPQEKSNESSNNNSEVNTEAENGGGRGRGRGRRGGG 1951


>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 98  ERSQKTTSSRSEVEINEELQRGSGDDEGTG 187
           E+SQ  T+S   V++    + G  DD GTG
Sbjct: 5   EKSQSNTNSMQRVKVYHLNEDGKWDDRGTG 34


>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
           putative similar to GI:7159943 from [Mus musculus] (RNA
           6 (4), 638-650 (2000))
          Length = 295

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 380 SSPRSLHVGVASRSASGRGCSNDTVGGAR 294
           ++ RS   GV+ +S  GRG  N  VGG R
Sbjct: 22  AAARSGGKGVSRKSGRGRGGPNGVVGGGR 50


>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
           protein 
          Length = 573

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 98  ERSQKTTSSRSEVEINEELQRGSGDDEGTGRRRPGE 205
           +R Q +  SRS   ++E+  R    D   G+RR G+
Sbjct: 538 DRGQSSLKSRSRSRMSEDDHRSRSRDADYGKRRRGD 573


>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
           metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 364

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 84  IHCTYSYTHFNGKP 43
           +H T  YT+FNGKP
Sbjct: 144 LHTTAHYTYFNGKP 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,152,462
Number of Sequences: 28952
Number of extensions: 107106
Number of successful extensions: 336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)