Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20972
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    28   1.1  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    28   1.5  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.9  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    25   7.9  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 310 SACCFYKNITRTNLDITGTSFKGRFPAVTCPTFCT 206
           S   FY N  +  L  +GTSF  R  A TC    T
Sbjct: 672 SPLMFYANFGQEELSASGTSFLNRTEASTCEKIVT 706


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 695 FIIATFGIVATVMPVEVFTRVTNCGVLLACAPAPVFFMMT 576
           +I  TFG V++   +  F+    C  + AC   PVF++ T
Sbjct: 293 YIHETFGPVSSPYYIVRFSTEEECSAINACMGRPVFYVPT 332


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 506 LFDHLILLSISYIQVFLLVGQPAFHLLFESCP 411
           +F H I   +S  Q  LL   P  +LLFE CP
Sbjct: 96  MFSHKIWEDLSLPQNELLESGPNRNLLFEPCP 127


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 182 SRKIDSQQCAESRTSHCWKSTLETCAGNVKIGTSNVLVKTAGGMPLQGGVANLQTKVATG 361
           +R I + Q A+   SH  ++  +T   +V + T     +  G +PL+   AN   + +  
Sbjct: 190 ARFIGASQLAKLSASHAHQTPAQTVDDDVPLPTRMAATELVGHIPLR--AANYANEYSQD 247

Query: 362 VP 367
           VP
Sbjct: 248 VP 249


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 381 APSFTGTPVATFVCRFATPPCKGIPP 304
           APSFTG P +    +     C+  PP
Sbjct: 3   APSFTGLPTSMLSVKMICSECREDPP 28


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 375 SFTGTPVATFVCRFATPPC 319
           +FTG  + T +C+   PPC
Sbjct: 50  TFTGRQIYTSICKSRIPPC 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,328
Number of Sequences: 5004
Number of extensions: 58372
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)