BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20972 (702 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 28 1.1 SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 28 1.5 SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 4.5 SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 7.9 SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 25 7.9 SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.9 >SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 925 Score = 28.3 bits (60), Expect = 1.1 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = -3 Query: 310 SACCFYKNITRTNLDITGTSFKGRFPAVTCPTFCT 206 S FY N + L +GTSF R A TC T Sbjct: 672 SPLMFYANFGQEELSASGTSFLNRTEASTCEKIVT 706 >SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 516 Score = 27.9 bits (59), Expect = 1.5 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -2 Query: 695 FIIATFGIVATVMPVEVFTRVTNCGVLLACAPAPVFFMMT 576 +I TFG V++ + F+ C + AC PVF++ T Sbjct: 293 YIHETFGPVSSPYYIVRFSTEEECSAINACMGRPVFYVPT 332 >SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 339 Score = 26.2 bits (55), Expect = 4.5 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 506 LFDHLILLSISYIQVFLLVGQPAFHLLFESCP 411 +F H I +S Q LL P +LLFE CP Sbjct: 96 MFSHKIWEDLSLPQNELLESGPNRNLLFEPCP 127 >SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1184 Score = 25.4 bits (53), Expect = 7.9 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = +2 Query: 182 SRKIDSQQCAESRTSHCWKSTLETCAGNVKIGTSNVLVKTAGGMPLQGGVANLQTKVATG 361 +R I + Q A+ SH ++ +T +V + T + G +PL+ AN + + Sbjct: 190 ARFIGASQLAKLSASHAHQTPAQTVDDDVPLPTRMAATELVGHIPLR--AANYANEYSQD 247 Query: 362 VP 367 VP Sbjct: 248 VP 249 >SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces pombe|chr 1|||Manual Length = 340 Score = 25.4 bits (53), Expect = 7.9 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = -1 Query: 381 APSFTGTPVATFVCRFATPPCKGIPP 304 APSFTG P + + C+ PP Sbjct: 3 APSFTGLPTSMLSVKMICSECREDPP 28 >SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 104 Score = 25.4 bits (53), Expect = 7.9 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -1 Query: 375 SFTGTPVATFVCRFATPPC 319 +FTG + T +C+ PPC Sbjct: 50 TFTGRQIYTSICKSRIPPC 68 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,828,328 Number of Sequences: 5004 Number of extensions: 58372 Number of successful extensions: 136 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 136 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 325165428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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