Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20972
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0313 + 2216498-2216953 34 0.095
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 31 1.2
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 30 1.5
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 30 2.0
07_01_0311 - 2211824-2212410,2213275-2213290 29 2.7
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 29 3.6
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 29 4.7
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 28 6.2
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 28 8.3
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657 28 8.3
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 8.3
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 28 8.3
>07_01_0313 + 2216498-2216953
Length = 151
Score = 34.3 bits (75), Expect = 0.095
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -3
Query: 235 PAVTCPTFCTLL-GVNFP*MLVVPIFSGTALPASLTGILPALNFTGTAPLPPVFTCT*RG 59
PA+ PT T++ V P + VP + +PA T +PA+ +P V T
Sbjct: 47 PAMPKPTIPTIVPAVTLPPIPAVPKVTLPPMPAIPT--VPAVTMPPMPAVPAVPAVTLPP 104
Query: 58 VPAPPEADPNTICAPDCAV 2
+PA P PNT+ P V
Sbjct: 105 MPAVPTVPPNTVVVPAAVV 123
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113
S G + A+ F T +GV F ++V P+++ PAS G+L +L
Sbjct: 180 SLGGSYAALMAARFVTSVGVGFA-VVVAPVYAVEISPASSRGVLSSL 225
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113
S + A+ F T +GV F ++V P+++ PAS G+L +L
Sbjct: 113 SLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVLSSL 158
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 325 WCCKPTNKSRHRGS--CETRRR*HSCDSQLRGHDSNSRWNAGW 447
+C +P++K+ G C R HSC S + G ++RW G+
Sbjct: 218 YCQQPSHKNVTHGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGY 260
>07_01_0311 - 2211824-2212410,2213275-2213290
Length = 200
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = +3
Query: 3 TAQSGAQIVLGSASGGAGTPRYVQVKT-GGSGAVPVKLSAGNMPVKLAGNAVPLKIGTTN 179
TA G + G+A G AG V T G +G + SA + GNAV IGT
Sbjct: 68 TAGIGGNVAAGTA-GTAGIGGTVTAGTVGTAGTAGIGGSATFGTAGMGGNAVFGTIGTAG 126
Query: 180 IQGKLTPNSVQKV---GQVTAGNL 242
I G + + G VTAG +
Sbjct: 127 IGGSVAAGTAGMAGIGGNVTAGTV 150
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113
S + A+ F T +GV F +V P+++ PAS G+L +L
Sbjct: 115 SLGATYAALMAARFVTSVGVGFA-RVVAPVYNAEISPASTRGVLTSL 160
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113
S + A+ F T +GV F ++V P+++ PAS G++ L
Sbjct: 116 SLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVVSTL 161
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 12 SGAQIVLGSASGGAGTPRYVQVKTGGSGAVPVKLSAGNMPVKLAGN 149
+ + +VL + G V TGG GA V L +GN+ ++L+ N
Sbjct: 177 NSSDLVLSDSKGRTVWTTMANV-TGGDGAYAVLLDSGNLVLRLSNN 221
>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
Length = 754
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 211 RK*DKSLLEIYP*N--LCR*CQDWYE*CSCKNSRRNALTGWCCKPTNKSRHR 360
RK D E+YP +C+ Y C CK +++ TG+ C+P + +R
Sbjct: 312 RKLDPKYEELYPCRKGVCQNTPGSYI-CKCKKGKKSDGTGYGCQPADSPDYR 362
>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
Length = 922
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 263 NVKIGTSNVLVKTAGG-MPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGT 439
N++ N+ +K G MP+ + + + GVP +G GN+P++ + +++ G T
Sbjct: 824 NLRYCMMNIELKFLQGVMPMLMEIEFYVSASSLGVPNDVGLGNLPLLNCAHISLECKGAT 883
Query: 440 LAGQQVK 460
G+QV+
Sbjct: 884 --GRQVE 888
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 12 SGAQIVLGSASGGAGTPRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAV 155
+ + +VL + G + TGGSGA V L++GN+ ++ + +
Sbjct: 2475 NSSDLVLSESGGHTLWEARNNITTGGSGATVVLLNSGNLVLRSPNHTI 2522
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = +2
Query: 314 PLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTLAGQQVKTPVYKILTAKS 493
P Q G Q VA G P G+G +P A GG+ Q+ G + Q + +
Sbjct: 127 PGQAGAPQPQMNVA-GAPRPQGSGMMPGSAQIGGSQQVNAGAVPRPQGVNSMMPAASQGG 185
Query: 494 GDQTAQWLHQQXLVRQ 541
Q Q+ Q+ + Q
Sbjct: 186 ALQPTQFATQRGMQSQ 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,918,430
Number of Sequences: 37544
Number of extensions: 465631
Number of successful extensions: 1496
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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