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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20972
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0313 + 2216498-2216953                                           34   0.095
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    31   1.2  
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989     30   1.5  
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427...    30   2.0  
07_01_0311 - 2211824-2212410,2213275-2213290                           29   2.7  
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931     29   3.6  
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747     29   4.7  
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638...    28   6.2  
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009     28   8.3  
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657     28   8.3  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    28   8.3  
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170...    28   8.3  

>07_01_0313 + 2216498-2216953
          Length = 151

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 235 PAVTCPTFCTLL-GVNFP*MLVVPIFSGTALPASLTGILPALNFTGTAPLPPVFTCT*RG 59
           PA+  PT  T++  V  P +  VP  +   +PA  T  +PA+       +P V   T   
Sbjct: 47  PAMPKPTIPTIVPAVTLPPIPAVPKVTLPPMPAIPT--VPAVTMPPMPAVPAVPAVTLPP 104

Query: 58  VPAPPEADPNTICAPDCAV 2
           +PA P   PNT+  P   V
Sbjct: 105 MPAVPTVPPNTVVVPAAVV 123


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113
           S  G + A+    F T +GV F  ++V P+++    PAS  G+L +L
Sbjct: 180 SLGGSYAALMAARFVTSVGVGFA-VVVAPVYAVEISPASSRGVLSSL 225


>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
          Length = 476

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113
           S    + A+    F T +GV F  ++V P+++    PAS  G+L +L
Sbjct: 113 SLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVLSSL 158


>12_02_0588 -
           20842209-20842337,20842464-20842560,20842620-20842733,
           20843140-20843749,20844739-20845462,20845542-20845620,
           20845783-20845865,20846148-20846226,20846332-20846420,
           20846499-20846591,20847288-20847337,20847417-20847600,
           20849227-20849542,20849626-20849657
          Length = 892

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 325 WCCKPTNKSRHRGS--CETRRR*HSCDSQLRGHDSNSRWNAGW 447
           +C +P++K+   G   C    R HSC S + G   ++RW  G+
Sbjct: 218 YCQQPSHKNVTHGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGY 260


>07_01_0311 - 2211824-2212410,2213275-2213290
          Length = 200

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +3

Query: 3   TAQSGAQIVLGSASGGAGTPRYVQVKT-GGSGAVPVKLSAGNMPVKLAGNAVPLKIGTTN 179
           TA  G  +  G+A G AG    V   T G +G   +  SA      + GNAV   IGT  
Sbjct: 68  TAGIGGNVAAGTA-GTAGIGGTVTAGTVGTAGTAGIGGSATFGTAGMGGNAVFGTIGTAG 126

Query: 180 IQGKLTPNSVQKV---GQVTAGNL 242
           I G +   +       G VTAG +
Sbjct: 127 IGGSVAAGTAGMAGIGGNVTAGTV 150


>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
          Length = 478

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113
           S    + A+    F T +GV F   +V P+++    PAS  G+L +L
Sbjct: 115 SLGATYAALMAARFVTSVGVGFA-RVVAPVYNAEISPASTRGVLTSL 160


>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
          Length = 471

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113
           S    + A+    F T +GV F  ++V P+++    PAS  G++  L
Sbjct: 116 SLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVVSTL 161


>04_04_1268 -
           32262994-32263017,32263411-32263488,32263653-32263800,
           32263890-32264127,32264210-32264420,32264499-32264680,
           32264765-32264866,32265009-32266317,32266906-32266988,
           32267436-32267559
          Length = 832

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 12  SGAQIVLGSASGGAGTPRYVQVKTGGSGAVPVKLSAGNMPVKLAGN 149
           + + +VL  + G         V TGG GA  V L +GN+ ++L+ N
Sbjct: 177 NSSDLVLSDSKGRTVWTTMANV-TGGDGAYAVLLDSGNLVLRLSNN 221


>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
          Length = 754

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 211 RK*DKSLLEIYP*N--LCR*CQDWYE*CSCKNSRRNALTGWCCKPTNKSRHR 360
           RK D    E+YP    +C+     Y  C CK  +++  TG+ C+P +   +R
Sbjct: 312 RKLDPKYEELYPCRKGVCQNTPGSYI-CKCKKGKKSDGTGYGCQPADSPDYR 362


>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
          Length = 922

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +2

Query: 263  NVKIGTSNVLVKTAGG-MPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGT 439
            N++    N+ +K   G MP+   +    +  + GVP  +G GN+P++  +  +++  G T
Sbjct: 824  NLRYCMMNIELKFLQGVMPMLMEIEFYVSASSLGVPNDVGLGNLPLLNCAHISLECKGAT 883

Query: 440  LAGQQVK 460
              G+QV+
Sbjct: 884  --GRQVE 888


>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
            32208604-32208814,32208927-32209108,32209196-32209297,
            32210002-32211187,32212103-32212499,32212551-32212582,
            32212885-32213157,32213307-32213394,32213486-32213723,
            32213824-32214034,32214119-32214300,32214378-32214479,
            32214801-32216224,32216751-32216822,32217688-32217719,
            32218186-32218263,32218425-32218512,32218608-32218845,
            32219060-32219162,32219386-32219558,32219644-32219745,
            32219825-32220606,32220659-32221012,32224055-32224140,
            32224250-32224400,32224534-32224771,32224876-32225119,
            32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 12   SGAQIVLGSASGGAGTPRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAV 155
            + + +VL  + G         + TGGSGA  V L++GN+ ++   + +
Sbjct: 2475 NSSDLVLSESGGHTLWEARNNITTGGSGATVVLLNSGNLVLRSPNHTI 2522


>03_01_0216 -
           1700223-1700666,1700749-1700860,1701534-1701837,
           1702358-1702426,1702543-1702657,1702740-1702811,
           1702918-1703016,1703148-1703219,1703394-1703465,
           1704940-1705154,1705277-1705495,1705792-1707076,
           1707270-1707398
          Length = 1068

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +2

Query: 314 PLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTLAGQQVKTPVYKILTAKS 493
           P Q G    Q  VA G P   G+G +P  A  GG+ Q+  G +   Q    +    +   
Sbjct: 127 PGQAGAPQPQMNVA-GAPRPQGSGMMPGSAQIGGSQQVNAGAVPRPQGVNSMMPAASQGG 185

Query: 494 GDQTAQWLHQQXLVRQ 541
             Q  Q+  Q+ +  Q
Sbjct: 186 ALQPTQFATQRGMQSQ 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,918,430
Number of Sequences: 37544
Number of extensions: 465631
Number of successful extensions: 1496
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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