BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20972 (702 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_01_0313 + 2216498-2216953 34 0.095 11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 31 1.2 11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 30 1.5 12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 30 2.0 07_01_0311 - 2211824-2212410,2213275-2213290 29 2.7 11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 29 3.6 11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 29 4.7 04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 28 6.2 12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 28 8.3 11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657 28 8.3 04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 8.3 03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 28 8.3 >07_01_0313 + 2216498-2216953 Length = 151 Score = 34.3 bits (75), Expect = 0.095 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Frame = -3 Query: 235 PAVTCPTFCTLL-GVNFP*MLVVPIFSGTALPASLTGILPALNFTGTAPLPPVFTCT*RG 59 PA+ PT T++ V P + VP + +PA T +PA+ +P V T Sbjct: 47 PAMPKPTIPTIVPAVTLPPIPAVPKVTLPPMPAIPT--VPAVTMPPMPAVPAVPAVTLPP 104 Query: 58 VPAPPEADPNTICAPDCAV 2 +PA P PNT+ P V Sbjct: 105 MPAVPTVPPNTVVVPAAVV 123 >11_06_0495 - 24319531-24320831,24320923-24321109,24322919-24323062, 24324467-24324469 Length = 544 Score = 30.7 bits (66), Expect = 1.2 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -3 Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113 S G + A+ F T +GV F ++V P+++ PAS G+L +L Sbjct: 180 SLGGSYAALMAARFVTSVGVGFA-VVVAPVYAVEISPASSRGVLSSL 225 >11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 Length = 476 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -3 Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113 S + A+ F T +GV F ++V P+++ PAS G+L +L Sbjct: 113 SLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVLSSL 158 >12_02_0588 - 20842209-20842337,20842464-20842560,20842620-20842733, 20843140-20843749,20844739-20845462,20845542-20845620, 20845783-20845865,20846148-20846226,20846332-20846420, 20846499-20846591,20847288-20847337,20847417-20847600, 20849227-20849542,20849626-20849657 Length = 892 Score = 29.9 bits (64), Expect = 2.0 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +1 Query: 325 WCCKPTNKSRHRGS--CETRRR*HSCDSQLRGHDSNSRWNAGW 447 +C +P++K+ G C R HSC S + G ++RW G+ Sbjct: 218 YCQQPSHKNVTHGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGY 260 >07_01_0311 - 2211824-2212410,2213275-2213290 Length = 200 Score = 29.5 bits (63), Expect = 2.7 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Frame = +3 Query: 3 TAQSGAQIVLGSASGGAGTPRYVQVKT-GGSGAVPVKLSAGNMPVKLAGNAVPLKIGTTN 179 TA G + G+A G AG V T G +G + SA + GNAV IGT Sbjct: 68 TAGIGGNVAAGTA-GTAGIGGTVTAGTVGTAGTAGIGGSATFGTAGMGGNAVFGTIGTAG 126 Query: 180 IQGKLTPNSVQKV---GQVTAGNL 242 I G + + G VTAG + Sbjct: 127 IGGSVAAGTAGMAGIGGNVTAGTV 150 >11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 Length = 478 Score = 29.1 bits (62), Expect = 3.6 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -3 Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113 S + A+ F T +GV F +V P+++ PAS G+L +L Sbjct: 115 SLGATYAALMAARFVTSVGVGFA-RVVAPVYNAEISPASTRGVLTSL 160 >11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 Length = 471 Score = 28.7 bits (61), Expect = 4.7 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -3 Query: 253 SFKGRFPAVTCPTFCTLLGVNFP*MLVVPIFSGTALPASLTGILPAL 113 S + A+ F T +GV F ++V P+++ PAS G++ L Sbjct: 116 SLGATYAALMAARFVTSVGVGFS-LVVAPVYNAEISPASARGVVSTL 161 >04_04_1268 - 32262994-32263017,32263411-32263488,32263653-32263800, 32263890-32264127,32264210-32264420,32264499-32264680, 32264765-32264866,32265009-32266317,32266906-32266988, 32267436-32267559 Length = 832 Score = 28.3 bits (60), Expect = 6.2 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 12 SGAQIVLGSASGGAGTPRYVQVKTGGSGAVPVKLSAGNMPVKLAGN 149 + + +VL + G V TGG GA V L +GN+ ++L+ N Sbjct: 177 NSSDLVLSDSKGRTVWTTMANV-TGGDGAYAVLLDSGNLVLRLSNN 221 >12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 Length = 754 Score = 27.9 bits (59), Expect = 8.3 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +1 Query: 211 RK*DKSLLEIYP*N--LCR*CQDWYE*CSCKNSRRNALTGWCCKPTNKSRHR 360 RK D E+YP +C+ Y C CK +++ TG+ C+P + +R Sbjct: 312 RKLDPKYEELYPCRKGVCQNTPGSYI-CKCKKGKKSDGTGYGCQPADSPDYR 362 >11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657 Length = 922 Score = 27.9 bits (59), Expect = 8.3 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = +2 Query: 263 NVKIGTSNVLVKTAGG-MPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGT 439 N++ N+ +K G MP+ + + + GVP +G GN+P++ + +++ G T Sbjct: 824 NLRYCMMNIELKFLQGVMPMLMEIEFYVSASSLGVPNDVGLGNLPLLNCAHISLECKGAT 883 Query: 440 LAGQQVK 460 G+QV+ Sbjct: 884 --GRQVE 888 >04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500, 32208604-32208814,32208927-32209108,32209196-32209297, 32210002-32211187,32212103-32212499,32212551-32212582, 32212885-32213157,32213307-32213394,32213486-32213723, 32213824-32214034,32214119-32214300,32214378-32214479, 32214801-32216224,32216751-32216822,32217688-32217719, 32218186-32218263,32218425-32218512,32218608-32218845, 32219060-32219162,32219386-32219558,32219644-32219745, 32219825-32220606,32220659-32221012,32224055-32224140, 32224250-32224400,32224534-32224771,32224876-32225119, 32225190-32225368,32225577-32225675,32225835-32227083 Length = 3195 Score = 27.9 bits (59), Expect = 8.3 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +3 Query: 12 SGAQIVLGSASGGAGTPRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAV 155 + + +VL + G + TGGSGA V L++GN+ ++ + + Sbjct: 2475 NSSDLVLSESGGHTLWEARNNITTGGSGATVVLLNSGNLVLRSPNHTI 2522 >03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837, 1702358-1702426,1702543-1702657,1702740-1702811, 1702918-1703016,1703148-1703219,1703394-1703465, 1704940-1705154,1705277-1705495,1705792-1707076, 1707270-1707398 Length = 1068 Score = 27.9 bits (59), Expect = 8.3 Identities = 21/76 (27%), Positives = 31/76 (40%) Frame = +2 Query: 314 PLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTLAGQQVKTPVYKILTAKS 493 P Q G Q VA G P G+G +P A GG+ Q+ G + Q + + Sbjct: 127 PGQAGAPQPQMNVA-GAPRPQGSGMMPGSAQIGGSQQVNAGAVPRPQGVNSMMPAASQGG 185 Query: 494 GDQTAQWLHQQXLVRQ 541 Q Q+ Q+ + Q Sbjct: 186 ALQPTQFATQRGMQSQ 201 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,918,430 Number of Sequences: 37544 Number of extensions: 465631 Number of successful extensions: 1496 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1421 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1495 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1803843684 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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